| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2847 |
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| Symbol | |
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| ID | 6117162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3478496 |
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| End bp | 3480508 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634393 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001761217 |
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| Protein GI | 170727191 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000873668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000438605 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGCGA TAGAAGAGAT CAAACAACTA ACTGAGACAA TCAATGAGCA TAATCACAGC
TACTATGTTG AGGATTCACC CAGTGTTCCT GATGCTGAAT ATGACCGTTT AATCAACCGC
TTAAAGCAGC TTGAAGGGGA GAATCCCCAT TTGTGTCTAC CTACCTCTCC AACACAGAGA
GTAGGCGGAA TGGCGCTGGC TAAGTTTGAT CAGATAACTC ACCTTAAACC TATGCTCAGT
TTAGACAATG TGTTTAGTGA GGAGGAGTTT GAGGCTTTTT ATAAACGCAT CAGTGATAAA
ACCAGTGAAG CACCAACATT TTGTTGTGAG CCTAAGCTCG ATGGATTGGC GGTAAGCATA
CTCTATCGAG ATGGCGTATA TGAACGTGCT GCGACCCGTG GCGATGGTAC CACTGGTGAA
GATATCAGCG AAAATGTGCG CACAATTCTC TCTATACCGC TTAAGTTACG CGGTGATAAT
TTCCCACCTC TACTTGAGGT AAGAGGAGAG GTTATCATGC CTAAAAAAGC CTTCGATGCC
CTCAATGATA GAGCGAGAGC TAAAGGTGAA AAGCTGTTTG TTAACCCAAG AAATGCGGCA
GCAGGTAGCT TGAGGCAGCT AGACAGTAAA ATTACTGCTA GCCGAGCTTT AGGATTTTAC
GCCTATGCGC TTGGAGTGGT TGAGCCTGAA ACATGGGCGT TGGCTGACAC CCACTATGAT
CAGTTAATGC AGCTTAGAGC TTGGGGATTC CCTGTTAGCG CCGAGGTAAA ACAGTGCGGT
GATGTTAGCT CTGTGGTGGC TTACTATACC GATATCATGA CTCGCCGTGA CTCCCTCGAT
TATGAGATTG ATGGTGTGGT GATCAAGGTC GATAGTATTG AGCATCAAGG TCAGTTAGGT
TTTGTGGCTA AAGCGCCAAG ATGGGCTACA GCATTTAAGT TTCCTGCCCA AGAGGAGGTT
ACACTGCTCG AAGGCGTCGA TTTTCAGGTC GGACGCACTG GCGCTGTAAC CCCTGTAGCG
AGACTAAAAC CAGTGTTTGT GGGTGGTGTG ACGGTATCAA ATGCCACCTT ACATAATGCC
GATGAGATAG CTAGGCTTGG GGTGAAAGTG GGGGATACCG TTATCGTGCG CCGCGCGGGT
GATGTTATCC CACAAATTGT TGCCATTGTT GCTGATAAAC GTCCCGATGA CGCCCGTGAA
ATTGAGTTTC CTGACACTTG CCCTGTGTGT AACAGCATGG TTGAACGTGT TGAAGGTGAG
GCGGTTGCAC GTTGTACTGG CGGTCTGTTC TGTGAGGCGC AGCGTAAAGA AGCGATTAAA
CATTTCGCTT CTCGCAAAGC GTTAGATATT GATGGCATGG GTGATAAGGT GGTTGAACAG
TTAATTGACA AGGAGCTGGT TGAAAGCCCA GCAGATCTGT TTAAGTTAAC AGCGTCAGCG
ATCACCATGT TAGATCGTAT GGGGATGAAG TCGGCCACCA ATTTAGTGGC GGCCATTGAA
GTAGCTAAGA CCACCACGTT TAGCCGTTTC TTGTATGGAT TAGGAATTAG AGAAGTGGGG
GAGGCGACTG CAGCTAACTT GGCCAACTAT TTTAAGACTT TAGATAAGCT TAAAGCGGCG
GATGCCGAGA GCTTTATTAA GGTCGATGAC GTGGGCACTA TTGTAGCTCA ACACCTAACA
CACTTCTTTG CTCAACCTCA TAACCTTGAA GTGGTTGATA AGTTAATTGA AGCGGGTGTT
AATTGGCCTG AGATTGAAGA GGTCGCTGAA GAATCGCTTT CGCTTAAGGG ACAAACCTGG
GTGTTAACAG GTACATTAAC TCAGTTAAAT AGGAACGATG CTAAGGCAAG ACTTCAGGCG
CTTGGTGCTA AAGTTGCAGG TAGCGTCTCA AAAAATACCG ACTGTCTAGT GGCTGGCGAA
GCCGCTGGCT CTAAGCTGAC AAAAGCTCAG GACTTAGGAG TAAAGGTTAT CGATGAAGAG
GCGCTTTTAC AGCTACTCTC CGATAGCGAA TAA
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| Protein sequence | MHAIEEIKQL TETINEHNHS YYVEDSPSVP DAEYDRLINR LKQLEGENPH LCLPTSPTQR
VGGMALAKFD QITHLKPMLS LDNVFSEEEF EAFYKRISDK TSEAPTFCCE PKLDGLAVSI
LYRDGVYERA ATRGDGTTGE DISENVRTIL SIPLKLRGDN FPPLLEVRGE VIMPKKAFDA
LNDRARAKGE KLFVNPRNAA AGSLRQLDSK ITASRALGFY AYALGVVEPE TWALADTHYD
QLMQLRAWGF PVSAEVKQCG DVSSVVAYYT DIMTRRDSLD YEIDGVVIKV DSIEHQGQLG
FVAKAPRWAT AFKFPAQEEV TLLEGVDFQV GRTGAVTPVA RLKPVFVGGV TVSNATLHNA
DEIARLGVKV GDTVIVRRAG DVIPQIVAIV ADKRPDDARE IEFPDTCPVC NSMVERVEGE
AVARCTGGLF CEAQRKEAIK HFASRKALDI DGMGDKVVEQ LIDKELVESP ADLFKLTASA
ITMLDRMGMK SATNLVAAIE VAKTTTFSRF LYGLGIREVG EATAANLANY FKTLDKLKAA
DAESFIKVDD VGTIVAQHLT HFFAQPHNLE VVDKLIEAGV NWPEIEEVAE ESLSLKGQTW
VLTGTLTQLN RNDAKARLQA LGAKVAGSVS KNTDCLVAGE AAGSKLTKAQ DLGVKVIDEE
ALLQLLSDSE
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