| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2838 |
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| Symbol | |
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| ID | 6117153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3468968 |
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| End bp | 3470686 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634384 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_001761208 |
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| Protein GI | 170727182 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000149628 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGTAC AAACTCTAAC GTATTTAATC GTGGGCGCAA CGTTTGCCCT CTATATTGGA
ATTGCGATCT GGTCCAGAGC CGGATCGACA AAAGAATTTT ATGTTGCAGG TGGCGGTGTC
CATCCTGTGA TGAATGGTAT GGCAACAGCG GCCGATTGGA TGTCTGCAGC GTCATTTATC
TCACTTGCTG GTATCGTTTC GTTTGTCGGA TATGATGGCT CTGTATACCT GATGGGTTGG
ACGGGAGGTT ATGTTCTGCT AGCGCTTTGC ATGGCACCTT ACCTACGTAA GTTTGGTAAG
TTTACGGTAC CTGACTTTAT TGGTGACCGT TACTACTCAC AAGCAGCACG TACCGTTGCC
GTTGTGTGTG CCATCTTTAT CTGCTTTACC TACATCGCGG GTCAGATGCG TGGTGTGGGC
GTGGTATTCT CACGCTTCCT CGAAGTTGAT GTTGAAACCG GTGTATATAT TGGTATGGCC
GTGGTCTTCT TCTACGCTGT ACTCGGTGGA ATGAAAGGCA TTACATACAC TCAGGTTGCA
CAGTATTGTG TGCTTATCTT CGCTTTCATG GTGCCAGCTA TCTTTATCTC TGTGATGATG
ACAGGCCATG TATTGCCACA AATCGGCTTT GGTGCTGAGC TTATTGATGC TGCGGGGAAT
GGTACCGGAG TCTACTTATT GGATAAGTTA GATGGCTTAT CGGCTGAACT CGGCTTTGCG
CAGTATACCG AAGGCTCTAA GAGCATGATT GATGTGTTCT TTATCACTGG TGCCTTGATG
TTTGGTACTG CTGGTCTGCC TCACGTTATT GTACGTTTCT TCACTGTACC TAAAGTAAAA
GATGCACGTG TATCAGCGGG TTGGGCACTT GTGTTCATCG CTATCATGTA CACCACTGTT
CCTGCTCTTT CAGCTTTCTC TCGTGTAAAC ATGATTGAAA CTATTAATGG TCCAGAATCA
ACGGGTGTTG CTTATGAAAC TGCGCCTGAG TGGATTAAGA ACTGGGAGAA GACTGGGCTT
ATTACATGGG ATGATAAAAA TGCTGATGGC AAGATCTACT ATGCTAAAGG CGCTGAAAAT
GAGATGAAGA TTGACCGTGA TATCATGGTT TTGGCAACAC CTGAAATTGC TAACTTACCA
GCTTGGGTTA TCGCACTGGT AGCAGCTGGT GGCTTAGCGG CGGCGTTATC AACTTCTGCT
GGTCTGCTGC TCGTTATCTC AACTTCGGTC TCTCATGATC TGTTGAAGAA AAACTTTATG
CCGGATATCT CAGATAAGAA AGAGTTGATG TTTGCTCGAA TCGCTGCGGC ACTCGGTATT
GTGATGGCAG GTTACTTCGG AATTAATCCA CCAGGCTTTG TAGCTGCGGT GGTAGCGATA
GCCTTTGGTT TAGCTGCATC GTCACTGTTC CCTGCTATTA TCATGGGGAT CTTCTCTAAA
ACCATAAACA AAGAGGGGGC GATTGCTGGT ATGGTCATTG GCCTACTGTT CACTGCCTCT
TATATTGTGT TCTTTAAGTT TGTTAACCCT GAGATTAACA ATGCAGATCA CTGGTTTATG
GGTATCTCTC CTGAAGGTAT CGGTATGTTA GGTATGTTTG TGAACTTTGC TGTCGCCTTC
GGTGTGAGTA AAGTGACTGC TGCTGTTCCT GCTGATGTTG TTGAGATGGT TGAGTCAATT
CGTTTCCCTA AAGGGTCTGG CGAAGCACAC GACCACTAA
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| Protein sequence | MDVQTLTYLI VGATFALYIG IAIWSRAGST KEFYVAGGGV HPVMNGMATA ADWMSAASFI
SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFIGDR YYSQAARTVA
VVCAIFICFT YIAGQMRGVG VVFSRFLEVD VETGVYIGMA VVFFYAVLGG MKGITYTQVA
QYCVLIFAFM VPAIFISVMM TGHVLPQIGF GAELIDAAGN GTGVYLLDKL DGLSAELGFA
QYTEGSKSMI DVFFITGALM FGTAGLPHVI VRFFTVPKVK DARVSAGWAL VFIAIMYTTV
PALSAFSRVN MIETINGPES TGVAYETAPE WIKNWEKTGL ITWDDKNADG KIYYAKGAEN
EMKIDRDIMV LATPEIANLP AWVIALVAAG GLAAALSTSA GLLLVISTSV SHDLLKKNFM
PDISDKKELM FARIAAALGI VMAGYFGINP PGFVAAVVAI AFGLAASSLF PAIIMGIFSK
TINKEGAIAG MVIGLLFTAS YIVFFKFVNP EINNADHWFM GISPEGIGML GMFVNFAVAF
GVSKVTAAVP ADVVEMVESI RFPKGSGEAH DH
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