| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2805 |
|---|
| Symbol | |
|---|
| ID | 6117114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3424678 |
|---|
| End bp | 3426027 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634345 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001761175 |
|---|
| Protein GI | 170727149 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00328953 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAA AATTTAAGCC TAAGAAACGT CTGCTCACAC GGATGTTTCT CACCTCCCTG
TCTATTATCG CCTTAGTGGG CTTCGGGTTA GCTTGGATGA TCAATATTCT CCATGCCCAA
AATAGCTATA ATGAAGAAAC GGCCCAGTTA ATCGCTGAGA TCCCTAAGGT TGCCGCAGAG
CTTAAAGAGC ATGATCTTAT TCCAGAGACA AGTGAATGGC TTGATGAAAA CAACACCCCA
GAGCGTTACG TCATCGCCAG TTGTGATGCT GACTTCAGGC AAGTATGGAC CTCATCATTA
GCTGTCGACA AAGGCTTATT TGATACCTGC GAACGTTTTA ATGAGATCCG CAATGACTCC
CCCCCCTATT ATCTCAACTT AGCCGATGAA AAAGGCTATT TTATCTACCT TTTAGCCGTG
GAAATTGCAG GTAATAAGTA CAACTTGCTG GTGATGAAAG ATGCAGAAAA TCTAGAAGCT
GAACTCGATA AATTCAGCCG TCTCACCTAT ATCAGATTAG CCATGGTACT TGCCCTAGCC
CTTGTTTTAT TGATCAGTGC TGGCTATTGG GGAATGCGTC CTTTGGTGCG TATGCGATCT
GAGCTTGAGA GCGTCAATAA TGGCAAATCC AAGAGCCTAT CTCAGGATTA CCCCGTTGAA
CTTGAAGGTG TTACCCAAGC CTTAAACCAA CTTTTGGTTC AGTCAAGCGC TCAGCAAGAC
AGATATCAAA ATGCAATGAA TGACTTGGCC CACAGTCTAA AAACCCGACT TGCCGCTGTA
CATGCCATCA CAGATGACAT CAATCTAGAT AAACACAGTG CCAGCGAGAA GATTATGGAG
CAGGTCAGCC AGATGGACCT ATTGGTTAAA TACCAGTTAA AACGTGCCAT GTTAGGCAGA
AAAGGATTAA AGCAGGAACA GACCTTAGTC GCGCCTCTTG TTAATCAACT GTCACAGATG
TTGTTTAAAG TCTATCGAGA CAAGCAAGTG ATGTTTGAGG CCCATATTCC CATAGAACAT
GTGTTTCCTG GCGATAAAGG CGATCTGATG GAGCTATGCG GAAATCTGAT GGAAAATGCG
TTTAAACTCT GTATCAGCCA AGTTAGAGTG AGCGCCAGCT ACAACGATCA TGGCGAGTTC
TTGCTGGTCG TAGAGGATGA TGGACAGGGC GTCGACGATA GTATTAAGCA GAAGATCATC
CAGCGTGGTG TCAGAGCCGA CACGCAAAAA GCAGGACAAG GCATAGGTCT AGCAGTTTGC
CATGAAATTG TGACTAGCTA TGGTGGAAAA TTGGAAATTG AAGACTCAGA TCTTGAAGGT
GCCAAGTTTA TCATCACCAT TCCGATCTAA
|
|---|
| Protein sequence | MQLKFKPKKR LLTRMFLTSL SIIALVGFGL AWMINILHAQ NSYNEETAQL IAEIPKVAAE
LKEHDLIPET SEWLDENNTP ERYVIASCDA DFRQVWTSSL AVDKGLFDTC ERFNEIRNDS
PPYYLNLADE KGYFIYLLAV EIAGNKYNLL VMKDAENLEA ELDKFSRLTY IRLAMVLALA
LVLLISAGYW GMRPLVRMRS ELESVNNGKS KSLSQDYPVE LEGVTQALNQ LLVQSSAQQD
RYQNAMNDLA HSLKTRLAAV HAITDDINLD KHSASEKIME QVSQMDLLVK YQLKRAMLGR
KGLKQEQTLV APLVNQLSQM LFKVYRDKQV MFEAHIPIEH VFPGDKGDLM ELCGNLMENA
FKLCISQVRV SASYNDHGEF LLVVEDDGQG VDDSIKQKII QRGVRADTQK AGQGIGLAVC
HEIVTSYGGK LEIEDSDLEG AKFIITIPI
|
|---|
| |