| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2793 |
|---|
| Symbol | |
|---|
| ID | 6117102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3410891 |
|---|
| End bp | 3411943 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641634333 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001761163 |
|---|
| Protein GI | 170727137 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.500641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATA GACAAATAAC GCTCCTAGCA GCTTGTATCA CTTGTTTGTG TTCACCGGCA
CAGGCGATCG AACTTAATAT CTACGGTCAA GGTCATCTCT CGGTTGATAG TGTTGATGAT
GGACAAGATA GCAGTATCTA TGTTGCAAGT AACTCATCCC GTTTAGGCTT TAATGGCGAC
CATCAGATAA ACTCAGATCT GAAAATTATT TTTCAATATG AAACTGGTGT CGACCTTACA
GCTCAAGGAG GAAATGATGG TAATGGTGGT GCTGAGTCTT CTGGGCAGAT ATTTACCAAA
GGCCGTCCTT CGTTTTTAGG TATTGAAGGC AAATTTGGTA CTGCTTTAGC CGGCCACATG
CCATTTTTAG ATCAATATGC CAATGATTAT AATCTGTTTG CCGATCAGGT TGGCGATCTG
GGGAACCTCT GGGAAGCCAG TGGTATACCG GGACGTTCCG ATAATGTGGT CTATTATAAA
ACTCCTGACT TTTCTGGTTT TGATGCTGCT GTGACTTATG TTCCAGAGGA GGGGGTTGAT
GACTCTGATT ATTACCTCTT GAAGGGGAAC TATGTTAGAG ATGATTTAAA GTTAGGTGTC
ATGTACACAA GTATCGGCCA AGGGGAGATG GTTGATAAAG ACCATACTGC AGCTGCAGTA
ACCTTAGGTT ACCACTTTGG ACGCTTTAGC GTAGGTGGTG GTTATCAAAG TGAGATGGAT
ATCGGTGGTT CACCTGGGAA TGATAGAGAT AGTTTCTCCC TTGGTGGCAG CATGGAGGTG
GGGGACAAGG GTAAAATCAA AGCGCAATTT GCCGTTAGCT CTGGTGAAGG AGATGCAAGT
GATGCAACTC AGATAGCCGT CGGTTACGAT TATCAATTTG ATACTCAAAC AACCCTCTAC
ATTGCGTATG CGAATATGGA TAATGACGAT AATGTTAACT TTAGTGTGAA TGGTAAAGGC
CATGGAGATA AGGTGGTGCC TTTAATGGGC AATGACCCTC ACGCTATCTC ACTTGGTATT
GTTTACTCAT TTTCTCATGC GGTCGTTAAA TAA
|
|---|
| Protein sequence | MMNRQITLLA ACITCLCSPA QAIELNIYGQ GHLSVDSVDD GQDSSIYVAS NSSRLGFNGD
HQINSDLKII FQYETGVDLT AQGGNDGNGG AESSGQIFTK GRPSFLGIEG KFGTALAGHM
PFLDQYANDY NLFADQVGDL GNLWEASGIP GRSDNVVYYK TPDFSGFDAA VTYVPEEGVD
DSDYYLLKGN YVRDDLKLGV MYTSIGQGEM VDKDHTAAAV TLGYHFGRFS VGGGYQSEMD
IGGSPGNDRD SFSLGGSMEV GDKGKIKAQF AVSSGEGDAS DATQIAVGYD YQFDTQTTLY
IAYANMDNDD NVNFSVNGKG HGDKVVPLMG NDPHAISLGI VYSFSHAVVK
|
|---|
| |