| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2780 |
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| Symbol | |
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| ID | 6117088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3395903 |
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| End bp | 3396553 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634320 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001761151 |
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| Protein GI | 170727125 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.695057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.981627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGAAA ATGAGTACAC CAATATGCAG AAAGTCGAGG GGATCCGACA CATTGTCGAG
GTCAATAATA TCATCTCTAA ACAAACACAA GAGCAGGTTC CTACTGAGCT AAGTGCTTGG
ATAGTGCTAG TTGCCACTAA GCGCGATAAA CGTGCATTTA CTGCTATTTT TACTTTTTTT
GCCCCCAAGA TTAAGCGCTT TGGCATTAAG CAGCTCAACA CGGACGCCAT GGCGGCAGAG
CTGGTGCAGG AGACGCTATC ACGTGTATGG AACAAAGCGT CCCTTTTTGA CCCTAATAAG
GGCGCTGCAA CCACATGGGT TTATAGCATC ATGAGAAATG CCGCTTTCGA TATGTTGCGA
AAAATTAAGG TTAAGAATGA GCTGTTACTT GGCGACGATA TCTGGCCAAT TGAAGCCGAA
GAGTATAGCA CCAGTGAAGA GTTCTCTGAT CATTTGATGG ACAGGCAGAT AGCTGATTAT
GTTGATCAGT TACCAGAAGC TCAAAAGTTA GTCGTCAAAG GGGTATATTT TCAAGAATTA
TCTCAAGAGC AACTTGCTAA ACAGCTCAAT ATTCCAATTG GTACTGTTAA GTCCAGATTA
AGGTTAGCCC TTGCTAAGTT AAAAGAGCAG GTAGGAGAGT CACATGATTA A
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| Protein sequence | MLENEYTNMQ KVEGIRHIVE VNNIISKQTQ EQVPTELSAW IVLVATKRDK RAFTAIFTFF
APKIKRFGIK QLNTDAMAAE LVQETLSRVW NKASLFDPNK GAATTWVYSI MRNAAFDMLR
KIKVKNELLL GDDIWPIEAE EYSTSEEFSD HLMDRQIADY VDQLPEAQKL VVKGVYFQEL
SQEQLAKQLN IPIGTVKSRL RLALAKLKEQ VGESHD
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