| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2750 |
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| Symbol | |
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| ID | 6117058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3369219 |
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| End bp | 3371132 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641634290 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001761121 |
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| Protein GI | 170727095 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.944283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0367426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAC TTGAGGACAG AGAACAAGTT TTTCTGCGAA GAATAGACAG AGAGAAGCGT
GCTCGGCAGC AAGCGGAGCA GATCCTTAAT GAAAAAAGTA AGGAGTTATG GAACACCAAT
CAGAAATTAC AGCAGATCAA TGAGCAACTT GATCAGATGG TTAAAACCCG TACTAGTGAA
CTTGAGATTG CCAAGACTAA TGCAGAGCTT GAGAGCTTAG CGCATAAGAA TGCTAAGGAG
AGGTTTCAGT TGGCCATGCG GGCGACCAGT GCTGGCGTCT GGGAAAGGAA TATTGACGAG
GATGCTTGGT ATTTTAGTGA TCGTTTAATC GCACTATTTG GCTACAGCAG GGAGGAGTTG
CTATTTGGTT TTAAAAACCT CTCTTTTATC CATAATGAAG ACAAAAAGCC ACTACTCCAT
GTATTGAAAA ATCACTTTAG AAATGGCAAA GCTTTTGATT TTGAATGCCG GGTGCTGACC
AGTGAAGGGC GCTATAAATG GTTTTGGATT GTCGGCCAAG CGGTATGGAA CGACAAGGGC
GAAGTAGTTC GTATTGCAGG TTCTTTCAGT GACATCGACG AGCGAGTTGA GAACTCCAAG
TTGGTTGAGA AGATGGCTCA TTATGATCAT CTGACTATGG TGCCGAATCG TGTTTTATAC
AATCAAAAGC TGGATATTGC ACTCTCTCTT GCCGATAAAG AACAGAGCCA TCTAGCGGTT
ATTTTGATTG ATCTTAATGA CTTTAAACAG GTCAATGATA CTTTAGGTCA CAGCGCTGGT
GATCATCTGC TGCAACATAT TGCTAATCAA TTTAAGTTGA ATATCAGCGA GAGCGACATC
GTTGCCAGGT TGGGGGGAGA TGAGTTCTCT ATTGTGTTAA CTAATATAGC TAATCGCCAA
GCTGTGGTGA CAAAATGTGA GCAAGTACTC GAAATCATCT CCAGACCTTT CTATTACCAG
AAAAATTTAA TTATCCCGAA AATAAGCATG GGTATCGCAC TCTACCCTGA GTACGGCATG
ACACGTGATG AGTTGATGGT TAATGCCGAT CTCGCTATGT ATAAAGCTAA GGGGGAGAAA
CACATGGGCA GTGGCTTTCA GTTTTGTGAG CAGGAGCATA TTAATAAAAA TATGGAGCGA
ACAGAACTAA GCTCTGAACT GTGTGAAGCG ATCACTGAAA ACGAGTTTTT TATGCACTTT
CAACCTATCA TCGATCTGTC AAATGGTGAA GTGACCTTTG CTGAAGCCTT GATCCGTTGG
AAGCACACAA ATAAAGGGGT ACTGCTTCCT GAAAAGTTCA TTTCGATAGC TGAGGATAGT
GGGTTAATTA CTCGGTTAGG CAAGCTCTCT ATTGAACTGG TGGCTAAGCA GATTGACCGA
ATGATGGCAG CAAAACGATT ACAAAAATTG ACAATAAACA TCTCTCCATC GCACTTCCTA
TCACAAAGTT TCATGGAAGA TTTAAAAGAG ATCTTAAGTG TTTACCCCAA AATGTCATCG
TTTATCACGA TTGAGATCAC TGAAGTGGTA TTTTTACTCA ATATGGAGGT GGCGAAAAAA
ACGGTGATTG AGCTCCATGA TATGGGGATC ACAATTAGTC TGGATGATTT TGGTACTGGT
TATTCAAGTT TTAAATATCT ACAGCAGCTC CCGATTGATG TGATTAAACT TGATTGTTCC
TTTATTGCCG AATTAGACAT TGACCCATCC CATAGAAACA TAGCGTCGAC GATTATCGAG
CTTGCTCATT CGCTTGAGAT TAAGGTGATT GCGGAGGGGG TTGAAACCAA TAGTCAATTG
GTTTTCCTGC AAGATCATCA TTGTGATTTT GCTCAAGGTA GCTATTTTTT CAAGCCTCTA
AGTGTTATTG ATTTCCTGCA TATGCAGCGC TGTATCTCTT TACCCGCTAA ATAA
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| Protein sequence | MSALEDREQV FLRRIDREKR ARQQAEQILN EKSKELWNTN QKLQQINEQL DQMVKTRTSE
LEIAKTNAEL ESLAHKNAKE RFQLAMRATS AGVWERNIDE DAWYFSDRLI ALFGYSREEL
LFGFKNLSFI HNEDKKPLLH VLKNHFRNGK AFDFECRVLT SEGRYKWFWI VGQAVWNDKG
EVVRIAGSFS DIDERVENSK LVEKMAHYDH LTMVPNRVLY NQKLDIALSL ADKEQSHLAV
ILIDLNDFKQ VNDTLGHSAG DHLLQHIANQ FKLNISESDI VARLGGDEFS IVLTNIANRQ
AVVTKCEQVL EIISRPFYYQ KNLIIPKISM GIALYPEYGM TRDELMVNAD LAMYKAKGEK
HMGSGFQFCE QEHINKNMER TELSSELCEA ITENEFFMHF QPIIDLSNGE VTFAEALIRW
KHTNKGVLLP EKFISIAEDS GLITRLGKLS IELVAKQIDR MMAAKRLQKL TINISPSHFL
SQSFMEDLKE ILSVYPKMSS FITIEITEVV FLLNMEVAKK TVIELHDMGI TISLDDFGTG
YSSFKYLQQL PIDVIKLDCS FIAELDIDPS HRNIASTIIE LAHSLEIKVI AEGVETNSQL
VFLQDHHCDF AQGSYFFKPL SVIDFLHMQR CISLPAK
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