| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2748 |
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| Symbol | |
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| ID | 6117056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3365043 |
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| End bp | 3366998 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641634288 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001761119 |
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| Protein GI | 170727093 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0199433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0067097 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTAATG GTAAGTTAGT TGTATATCTT CTGATAATAT GGGCTTGGCA AATGCCATTG
ATAGCTCAAA GTACGGAGTT TACTCCTTTT GTTAATATTG CCACACTGAG TAATGGCAAA
AAAATATTGC AACTCCTTGA TAGTCAAGAT ATCGATTCGA AAATTAAACT GCAAAAACTC
AATCAATATA TCTTGGCAGA GCAATTTCAA CAATCTCCCT ATTACGCATT CGCATACTTT
CGTATCTTAC ATGATATTGA GATATCCCGT GGACAACCTA AAAAGGCCAA GCAAGCGATA
GAGAGTATGC TTTCGATTGG AAAAGAGCTG CAACAGACTT GGTTGGAAGC TGAAGCCTAT
ATGTGGCTTG CAACATTTGC GGCTAAAGAG GGTAATTTCG ATAATGGACT TAATCTAGTA
GAGCGAGCAA TCCGCTTATC GAAATCGGTT CAGTTTCATC ATTTAACGGC AAGGTCATAT
AACACCAAAG CCGCCTTATA TTATTTCCAG GATCAATATT ACCTCGCACT TGAGCTCTAC
TTGAGTGCAC TTGAGATCTT TATGATTGAT CCTGAAGATC CCTATGTCAG CAAGGTGTTA
TCTAATATTT CAATTATTTA CTTAGATCTT GAGGAGTGGG ATAAGGCGTG GGAGTCAAAT
TATGATGCAC TACAACATCT TGAAAAGTAT GGTGGCAGTA ATGAGCAGTA TACGGCCTTT
AACAATAATG CGGCATTTAT CTTAGAGCAG CTAGGTAGGG TAGAGGAGAG TGAACCCTAT
TTGATTAATG CACAAAAGTA CAGTGAGCGC ACCGGAGATA TACGGATAAA GCTCAACAAC
CTTTTAGCTT GGGCTCACTA TTATATTTCG ATCAAGCAAT ATCCACGTGC AATTACCTTT
GCCGAGCAAT GCCTCAACAA TGCTCAGGTT GAGAGTTATC CTGTTATTTA TAGTGATTGT
AATCGGTTAC TGGCGAAGGC TTTGCACCAT TTAGGGCAGC ATAAAGAAGC CATAGAGGTG
TTGAACTTGA GTCACAGCTT GTATAAGGAG ATGGAGAGTC AGGCCAATTT GGCCGATGTT
TATGCTTTAT ATTCTCTTGC TTTTGAAGCG CAAGGTGATT TTCAAACAGC CTTAATTTAT
CAACGTCAGG CGAATATAGA AGATAAAGCT TTGCTGTTTG ATAGACGAGC AAAGATGATT
TTTAATTTAA GCGAGCAGTA TAAAGATAAA TATCGCCAAC AACAGTTAGC ACTGTTGGAG
GCTGAAAATG CATTACAGAC CGCTAAGTTA GCAGAGCAGG GAACCCGTGA GAAGTTGATG
TTTTTTCTAA TCCTTGTCGG GGTATTTTTA ATTTTTATTT TGGTTAAAAA GCGCTATTGG
CTTGAAAGTC ATAACAAGAG TTTGCAGGAT TCAAATGATG AGCTTTACAA GCAATCCCAT
ATCGATAGTT TGACTGGCTT ATATAACCGA AGGTACTTTC TTGATTATTT AAATCAACTT
ACGCAACTGT CGCAGAGGCA GGCATCACAG GCTTGTATCG CCATTGTCGA TATCGACCAT
TTCAAGGCTG TTAATGACAC TTATGGCCAT GATATGGGGG ATGAAGTGCT AATACAGATA
AGTAAAGCAC TGCACGCAAA TATTCGCGAT AGCGATCTCG TTGTTCGTTG GGGAGGTGAG
GAGTTTGTTA TCTTGCTTTG TTGGCCGCAA AATTACACGT CTATCGGCTC AGAAGAGCTA
TTGGCTAAGT TTGAACGTAT ACGTTTAGCT GTATGCAATA AACCACTAGT GATGGATAAA
CTGACTATTC CTATTACTGT TTCTATTGGT ATAAGCCAGC CTCTAGACGC CAAAGAGCTA
ACACTTGAAT GGCACAGCGC CCTGGAGCAT GCTGATAAAG CACTGTATCA AGCCAAAGGC
CTTGGACGTA ATTGCGTCAT TATGGCTAAA AATTAA
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| Protein sequence | MRNGKLVVYL LIIWAWQMPL IAQSTEFTPF VNIATLSNGK KILQLLDSQD IDSKIKLQKL
NQYILAEQFQ QSPYYAFAYF RILHDIEISR GQPKKAKQAI ESMLSIGKEL QQTWLEAEAY
MWLATFAAKE GNFDNGLNLV ERAIRLSKSV QFHHLTARSY NTKAALYYFQ DQYYLALELY
LSALEIFMID PEDPYVSKVL SNISIIYLDL EEWDKAWESN YDALQHLEKY GGSNEQYTAF
NNNAAFILEQ LGRVEESEPY LINAQKYSER TGDIRIKLNN LLAWAHYYIS IKQYPRAITF
AEQCLNNAQV ESYPVIYSDC NRLLAKALHH LGQHKEAIEV LNLSHSLYKE MESQANLADV
YALYSLAFEA QGDFQTALIY QRQANIEDKA LLFDRRAKMI FNLSEQYKDK YRQQQLALLE
AENALQTAKL AEQGTREKLM FFLILVGVFL IFILVKKRYW LESHNKSLQD SNDELYKQSH
IDSLTGLYNR RYFLDYLNQL TQLSQRQASQ ACIAIVDIDH FKAVNDTYGH DMGDEVLIQI
SKALHANIRD SDLVVRWGGE EFVILLCWPQ NYTSIGSEEL LAKFERIRLA VCNKPLVMDK
LTIPITVSIG ISQPLDAKEL TLEWHSALEH ADKALYQAKG LGRNCVIMAK N
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