| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2730 |
|---|
| Symbol | |
|---|
| ID | 6117038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3346526 |
|---|
| End bp | 3347062 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641634270 |
|---|
| Product | peptidoglycan-associated lipoprotein |
|---|
| Protein accession | YP_001761101 |
|---|
| Protein GI | 170727075 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000414349 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000210242 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCA ATAAGCTGTT TAAAGCAATG TTGGTTGCAA TTCCGATGAT GGCCATCAGT
GCTTGTAGCT CGACTTCTGA CTCAGAAACT GATGCGACTA GCTCAAACTC AAGTTCTGGA
AGTGAACTGA CTACTGGTGG TGTAGAGACA GGTGGAGTTG CACCTGTGCT GACGCCTCAA
GAACAGCAAC GTTTAAAATA CCAAGAGTTA AGAAAAGAGC ATATTATCTA TTTTGATTTT
GACCGTAGCT CTGTATCAGC ACAGTTTGCT GAAGTCTTAC AAGCACATGG TGAATACCTT
ATTGAACATC CAAATGTTCG AGTGATGATT GAAGGTCATG CCGATGAGCG TGGAACACCT
GAGTACAACA TTGCTCTTGG TGAGAGACGT GCTAAAGCTG TGGCTAAGTA CCTACAGGGA
ATGGGTGTAC TGCCTAGCCA GATGAGCATC GTGAGTTATG GTGAAGAGAA GCCATTGGAT
ATGTCACGTA CTGACGATGG TTTTGCTGTT AACCGTAGAG CCGTACTGGT TTACTAA
|
|---|
| Protein sequence | MDLNKLFKAM LVAIPMMAIS ACSSTSDSET DATSSNSSSG SELTTGGVET GGVAPVLTPQ
EQQRLKYQEL RKEHIIYFDF DRSSVSAQFA EVLQAHGEYL IEHPNVRVMI EGHADERGTP
EYNIALGERR AKAVAKYLQG MGVLPSQMSI VSYGEEKPLD MSRTDDGFAV NRRAVLVY
|
|---|
| |