| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2690 |
|---|
| Symbol | nhaB |
|---|
| ID | 6116989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3295980 |
|---|
| End bp | 3297566 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641634221 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_001761061 |
|---|
| Protein GI | 170727035 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00015622 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.358514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTGA CTATGAGTCA GGCGTTTATT GATAACTTCT TAGGTAATTC GCCTAAGTGG
TTCAAAATCG CAATTTTATC ATTTTTAATC ATTAATCCGA TTGTGTTTTA TATCAATCCG
TTTGTAGCGG GATGGTTATT GGTCATTGAA TTTATTTTCA CTTTGGCCAT GGCATTAAAA
TGCTACCCAC TCCAACCTGG CGGACTACTT GCTATTCAAG CAGTAGCGAT AGGCATGACC
TCCCCCAGCC AAGTTTTCCA TGAAATAGAA GCAAACTTAG AAGTATTGTT ACTATTAGTC
TTCATGGTTG CTGGTATCTA CTTTATGAAG CAGCTACTTC TGTTTGGCTT CACTAAGATG
ATCACCAAAG TAAGGTCTAA AATAGTTGTT TCCTTGATGT TCTGTACTGC TTCAGCATTT
CTATCGGCTT TCCTAGATGC ATTAACGGTT ATAGCTGTGA TTATCGCCGT CGCAGTTGGT
TTCTACTCTA TCTACCATAA GGTGGCATCG GGTAAAACTT TCAATGACGA TCACGACCAC
ACTTCTGATG GACAAAAACA ATTATGCGAA GAGGAGCTAG AAGCATTTCG TGGCTTCCTG
CGTAACCTAC TGATGCATGC TGGTGTCGGT ACCGCATTAG GCGGTGTATG CACTATGGTC
GGTGAGCCAC AAAACTTGAT CATTGCTGCG CAAGCTAATT GGCAGTTTGC CGAATTTGCA
ATACGCATGT CCCCTGTAAC AGTCCCTGTG TTCTTTGCCG GTATTTTTAC CTGTTTCCTT
GTGGAGAAAT TTAAAATATT TGGCTATGGG CTACAGCTAC CAGAAGCCGT ACACAAGATT
TTATCTGACT ATGAAGCTCA TGAAGATGCT AGACGCACCA ATCATGACAA GATGAAGCTG
GTTGTACAGG CATTTATCGG AATTTGGTTG ATTGTAGGTT TAGCCCTTCA CTTAGCATCT
GTAGGTCTTA TCGGTCTGTC CGTTATTATC CTAGCAACAG CTTTTAATGG TGTAACCAAT
GAACATGCGC TGGGTAAGGC ATTTGAAGAA GCGCTACCTT TTACTGCATT GTTAGCCGTT
TTCTTTGCGG TTGTTGCCGT GATTATCGAT CAGCAACTGT TTGCTCCTGT GATCCAATGG
GCTCTGAGCT ATGAAGGTAA CACTCAATTA GTGATCTTCT ATATCGCCAA TGGCTTGCTC
TCTATGGTCA GCGACAACGT ATTTGTTGGC ACTGTCTACA TCAATGAAGT TAAAGCTGCA
CTCCTGTCTG GTCAAATCAC TCGTGATCAG TTTGACCTGT TGGCTGTAGC CATTAACACA
GGGACTAACT TGCCTTCAGT AGCTACCCCT AATGGTCAAG CCGCCTTCCT GTTCTTGTTA
ACCTCAGCCA TCGCTCCGCT TATTCGCCTC TCCTATGGGC GTATGGTGTG GATGGCACTG
CCATACACTA TCGTACTCTC TATCGTTGGT GTGCTTGCAA TTGAGCTTGG TGGATTAGAA
CAGATGACAC AGTACTTTTA CGATAATCAG ATTATTACCC ATCACTCGAT AAAAGATGTG
GTTGAATCTG CAGTGTCTTC ACACTAA
|
|---|
| Protein sequence | MPVTMSQAFI DNFLGNSPKW FKIAILSFLI INPIVFYINP FVAGWLLVIE FIFTLAMALK
CYPLQPGGLL AIQAVAIGMT SPSQVFHEIE ANLEVLLLLV FMVAGIYFMK QLLLFGFTKM
ITKVRSKIVV SLMFCTASAF LSAFLDALTV IAVIIAVAVG FYSIYHKVAS GKTFNDDHDH
TSDGQKQLCE EELEAFRGFL RNLLMHAGVG TALGGVCTMV GEPQNLIIAA QANWQFAEFA
IRMSPVTVPV FFAGIFTCFL VEKFKIFGYG LQLPEAVHKI LSDYEAHEDA RRTNHDKMKL
VVQAFIGIWL IVGLALHLAS VGLIGLSVII LATAFNGVTN EHALGKAFEE ALPFTALLAV
FFAVVAVIID QQLFAPVIQW ALSYEGNTQL VIFYIANGLL SMVSDNVFVG TVYINEVKAA
LLSGQITRDQ FDLLAVAINT GTNLPSVATP NGQAAFLFLL TSAIAPLIRL SYGRMVWMAL
PYTIVLSIVG VLAIELGGLE QMTQYFYDNQ IITHHSIKDV VESAVSSH
|
|---|
| |