| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2683 |
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| Symbol | |
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| ID | 6116982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3282077 |
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| End bp | 3285952 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634214 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001761054 |
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| Protein GI | 170727028 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTTCGC AACAACATCC TCTATCAAAC GCTTACCTTA ATCTTTGCTA TCAAGCAGAT
GCCTCCAGAA TTAAGCGTCG TCTCTATAGG CTAAATAAAG AGGTCGATTC TGATAAGAAG
CGTGCAAATC TTGAAAAGCT TGAGTCACAA GCCGTTGAAG CATTTGAGAA GGTAGAGAAG
CGCCGTCAAG CTCGCCCTGA GATCAGTTAT CCTGAAGGTC TGCCAATTTC GCAAAAACGC
GAAGAGATAG CCCGCGCCAT TGCGGGTAAT CAGGTGGTGA TCATCGCTGG GGAAACGGGA
TCGGGTAAAA CCACTCAGTT ACCAAAAATC TGTCTCGAAC TAGGTTTAGG CTGCCGTGGC
CTTATTGGTC ATACTCAGCC TCGACGACTC GCAGCAAGAA GTGTTGCCAC CCGTGTTGCT
GATGAACTTA ATAGCCCTTT AGGTGAAGCC GTTGGTTTTA AAGTAAGATT TGCTGACGCC
ATTAATAATG ATTCCTACAT CAAGTTAATG ACTGACGGTA TTTTGTTGGC TGAGCTGTCA
AATGATAAGT TTCTAGATCA ATACGACACC ATCATTATCG ATGAAGCCCA CGAACGAAGT
CTAAATATCG ACTTTATTTT AGGTTATCTT AAAAGTGTCC TGAAGCGTCG TCCCGATCTT
AAGGTGATTA TCACCTCAGC GACAATCGAT CTTGATAAGT TTTCACAGCA TTTTGGTGAT
GCACCTATTA TCGAGGTGTC CGGTCGAACC TATCCGGTTG AGACTCGTTT TCGCCCCTTA
GTGCGCGATA GCGATGAAGA TCTTGACCTC ACCGAGGGGA TTTTTGAAGC GGTTGATGAG
CTGACTAAAG AGGGTCCTGG GGACATTCTT ATTTTTATGA ACGGTGAGCG AGAGATCCGC
GACGTTGCCG ACCAGCTTAA TCGACGTCAA TACCGTGACA CTGAAATTTT ACCTCTCTAT
GCGCGCCTCT CCTATGGAGA ACAGTCAAAG GTGTTTAAGA GCCACGTTGG CCGCCGAATA
GTGTTAGCCA CCAATGTCGC AGAAACGTCG TTAACTGTCC CTGGGATACG TTATGTTATC
GATCCAGGTA CAGCGCGTAT CAGTCGATAT AGTTATCGAA CTAAGGTGCA ACGTCTGCCG
ATTGAGCCTA TCTCTCAAGC TAGTGCGAAT CAAAGACAGG GTCGATGTGG CCGTGTTGCG
CCCGGGATCT GTATACGTCT CTATGGGGAA GATGATTTTA TTAATCGCCC TGAATTTACC
GATCCTGAGA TTTTACGTAC TAATTTAGCG TCAGTTATCT TGAAGATGCT ATCGATTGGT
TTAGGTGATA TTGGCTCTTT CCCTTTTATT CAGCCACCAG ATCAGCGCTA TATTCAAGAT
GGCACTCTCC TGCTTGAGGA GCTTGAGGCT GTGACTAAGA GTAAAGGACG TTTGGCGTTA
ACCGGCTTGG GACGCCAATT GGCCACGATC CCAGTGGATC CTCGCTTAGC ACGTATGGTT
ATTCAGGCAA ATCAAAATGG CTGTTTGCAT GAAGCACTCG TCATTACCTC GGCCCTTTCT
ATCCAAGATC CCCGTGAGCG CCCAATGGAT AAGAAGCAAG CCAGCGATGA AGCTCACAAG
AAGCACAGTG ATAAAGATTC AGATTTTGTC TCCTATGTGA ATCTGTGGGA TCACATCAAG
TCACTGCAGA AACAGCACTC ATCCAGTCAG TTTAGAAAAC AGTGTAAGAA GGAGTTTCTT
GCCTACTTGA GAGTGCGAGA GTGGCAAGAC CTTTATACTC AGTTAAAGCA GGCTGTGCAT
GATCTAAAAT GGCGTCTTAA CAGTGAGCCT GCCGATTATG AACTGCTGCA TAAATCACTG
CTGACAGGGC TTTTAAGTCA TGTTGGTTTT AAAGATAAAG ACAATGAGTA TTTAGGTGCT
CGTAATCGAA AGTTCTTTGT GTTTCCAGGT TCCCCTTTGG CCAAGAAAGG GCCTAAGTGG
ATTATGGCGG CGGAGCTTAC TGAGACATCC CGTCTGTTTG CCCGTTGCTG CGCCAAAATT
CAGCCTGAGT GGATTGAGCC TTTAGCGGGC CATTTGATCA AGAAAAACTA CCTAGAACCT
CACTTTGAAG CAAAGCAGGG CAGTGTCGTT GCGTTAGAAA ATCAATTGCT ATATGGCTTG
ATGATAGTCA ACAGACGTAA AACCCAATAT GGCCCCGTTA ACCCTGTTGA AGCGCGCGAG
ATATTTATTC GCAGTGCCCT TGCAGAAGGG GAGTTGCGGA CAAATGAGTC GTTCTTTATT
AAAAATCGCA ACTTATTGCA GGAAGTTGAA GCATTAGAGC ATAAGTCTCG TCGCCGTGAC
ATCTTAGTCG ATGAGCAGGC GTTGGTGGAC TTCTATGAGC CTAAAATACC TGAAGGTATC
TACAACGCGC CTAAGTTCTT TAGCTGGTGG AAGCGTGAGC GTAAACAGAA TCCAGATCTG
CTGGATTTTG AACGTGAACA GTTGATGCAG CGCGGAGATT CACATATCTC AGCTTTGGAT
TTCCCCGATT TTTGGCATCA AGGGAACCTA AAGCTATCGG TCAGCTACCA TTTTGAACCC
TCTGCTGACG ATGATGGTGT TGCCATCCAT GTGCCTGTAG CCCTATTAAA TCAGATAGAG
GATGTGGATT TTGACTGGCA GGTACCAGGT CTTAGGGAGG AGAAATGCAT TGCACTTATC
AAATCCTTGC CTAAATCTAT CAGACGTAAC TTTGTCCCTG CGCCCGATTA CGCCAAAGCT
TGTTTACAAG CGATGAAGCC GTTTGAGATG AGTTTAGTTG AAGCCATGTG TAAACAGCTT
CTGCGCATGA GTGGAACTCG GGTTAATCCA GAGGATTTCG ATCAGAGCCA GCTTACTAAA
CATCTTCTGA TGAACTTTAA AGTAGAAGGT GACAAGGGGA AGTTAGTTGC TCAAGGCCGT
GACATTGAGG TGTTAAAAGC AAGTTTACAG GGGCAAGTTT CCCAAGCTAT CCGTAAAGTG
GCTGATTCTG GTATCGAAAA ATCTGAATTA ACCCAGTGGT CCTTCGGTAA CCTGCCAAGC
CAGTTCCAAC AAAAGAAAGG TAACTTCGAG GTTAAGGCAT TTCCTGCGTT GGTTGACGAT
AAAGAGAGTG TTTCGATCAA ATTATTTGAT GATGAAAATG AAGCGCTTCG CTCCCATCGT
AATGGCTTGC AACGTCTGCT GCTGATCAAT ATGCCATCAC CGGTTAAGCA CCTTCAAAAG
ACTTTGCCTA ACAAGGCTAA ACTTGCGATG TACTTTAATC CATTTGGTCA GGTGCAGATC
TTAATTGATG ACATACTTGC TGCTGCGGTT CAGCAACTGT TGGATGAAAA GGCATTGAAT
GTGCGCAATG AAGCTGACTT TGAAGTCGCC AAAGAGTGGG TTAGGCAGGA GCTTAATCCA
ACTGCTGCAA AATTAGCACT CAAGGTTGAA GAGATTTTAA CCCTGTATCA GAAGATAAAG
AAGCGACTCA AGGGCAAGAT AAGTTTAGAT ATCGCCTTTG CCATGAGTGA TATTCAGACC
CAATTGGATA AGCTGGTTTA TAAGGGCTTT GTTGAAGGTT GTGGTTGGCG AAGGCTGGCT
GATATGGCCC GTTACCTAAA AGCGGTGGAC AACCGTTTGG ATAAATTGCC TATCGATCCA
AACCGAGATC GTTTGCATAT GCATAGCATC AATAATGTTC AAAATGCACT TGAGGAGCAA
CTGGGCAAGG TACCACGTTC AGCTGCAATA CCTGAAGCCC TGCTAGATGC GAGATGGATG
ATAGAGGAGT ATCGAGTCTC CTGTTTTGCC CAAGTGTTAG GCACTGCATA CCCTATCTCA
GAAAAACGGA TATTGAACCG TATTAAAGAG AGTTAA
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| Protein sequence | MSSQQHPLSN AYLNLCYQAD ASRIKRRLYR LNKEVDSDKK RANLEKLESQ AVEAFEKVEK
RRQARPEISY PEGLPISQKR EEIARAIAGN QVVIIAGETG SGKTTQLPKI CLELGLGCRG
LIGHTQPRRL AARSVATRVA DELNSPLGEA VGFKVRFADA INNDSYIKLM TDGILLAELS
NDKFLDQYDT IIIDEAHERS LNIDFILGYL KSVLKRRPDL KVIITSATID LDKFSQHFGD
APIIEVSGRT YPVETRFRPL VRDSDEDLDL TEGIFEAVDE LTKEGPGDIL IFMNGEREIR
DVADQLNRRQ YRDTEILPLY ARLSYGEQSK VFKSHVGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVA PGICIRLYGE DDFINRPEFT
DPEILRTNLA SVILKMLSIG LGDIGSFPFI QPPDQRYIQD GTLLLEELEA VTKSKGRLAL
TGLGRQLATI PVDPRLARMV IQANQNGCLH EALVITSALS IQDPRERPMD KKQASDEAHK
KHSDKDSDFV SYVNLWDHIK SLQKQHSSSQ FRKQCKKEFL AYLRVREWQD LYTQLKQAVH
DLKWRLNSEP ADYELLHKSL LTGLLSHVGF KDKDNEYLGA RNRKFFVFPG SPLAKKGPKW
IMAAELTETS RLFARCCAKI QPEWIEPLAG HLIKKNYLEP HFEAKQGSVV ALENQLLYGL
MIVNRRKTQY GPVNPVEARE IFIRSALAEG ELRTNESFFI KNRNLLQEVE ALEHKSRRRD
ILVDEQALVD FYEPKIPEGI YNAPKFFSWW KRERKQNPDL LDFEREQLMQ RGDSHISALD
FPDFWHQGNL KLSVSYHFEP SADDDGVAIH VPVALLNQIE DVDFDWQVPG LREEKCIALI
KSLPKSIRRN FVPAPDYAKA CLQAMKPFEM SLVEAMCKQL LRMSGTRVNP EDFDQSQLTK
HLLMNFKVEG DKGKLVAQGR DIEVLKASLQ GQVSQAIRKV ADSGIEKSEL TQWSFGNLPS
QFQQKKGNFE VKAFPALVDD KESVSIKLFD DENEALRSHR NGLQRLLLIN MPSPVKHLQK
TLPNKAKLAM YFNPFGQVQI LIDDILAAAV QQLLDEKALN VRNEADFEVA KEWVRQELNP
TAAKLALKVE EILTLYQKIK KRLKGKISLD IAFAMSDIQT QLDKLVYKGF VEGCGWRRLA
DMARYLKAVD NRLDKLPIDP NRDRLHMHSI NNVQNALEEQ LGKVPRSAAI PEALLDARWM
IEEYRVSCFA QVLGTAYPIS EKRILNRIKE S
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