Gene Swoo_2645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2645 
Symbol 
ID6116944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3241305 
End bp3242264 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content38% 
IMG OID641634177 
Productintegron integrase 
Protein accessionYP_001761017 
Protein GI170726991 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02249] integron integrase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.400636 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCAAG CAACATACAT TGAGGCTATA CGTGCTGAGA TAAGGGTACG TCATTATAGC 
TATCAAACAG AAAAGTCTTA TCTTTATTGG AATCGATACT TTATAAGACA TTGCAATATT
CGTCATGGTG ATGATATTAC GCCAGCTTTG ATTGAACATT TTCTGTGTTT TTTAGCTGTA
CAATGCAAAG TGTCGGCTAG CACTCAGAAA CAAGCTTTGT GCGCGATTAT ATTTGCTTGT
CGCCACGTAT TGAAAATAGA GACTAAAGAG CTGCAATTTC CCTATGCAAA AACTCCGCAA
CGGATACCAC AGGTACTTTC TAGCGATGAA GCAAAACTGA TTATCAGTTT CTTATCAAAT
TATCATCATC TAATCGGTTC TATACTATTT GGAGCGGGAT TAAGGCTAAA AGAGGCATTA
AGACTCAGAA TAAAAGATAT TGATTTAAGC ACGAAGTCTA TCTTTGTCTA CCAAGGAAAA
GGGCAAAAAG ATCGAGTTTG TATGCTACCT AATGGCTTGG TCGATGAGTT AACATTACAA
ATGTCACATG TTAAAAAGAT ACATGATAGG GATCTTGTTG AAGGTTTTGG TTTAGCTTCT
TTGCCCATAT CTCTTATCAA AAAGTATCGT AGCAGTGCCG CTAAATTTCA CTGGCAGTAT
ATCTTCCCTG CGAGTCGCCG CTGTATACAT CCAAGCGATG AATATACGTG CCGACATCAT
ATTCATCCTA CTGCATTTTC AAGAGAATTG AGAAAAGCGA CTACCAAGAG TAATACCAAT
AAGCGCGTTA CTGCGCACAC TTTTCGTCAT TCATTTGCTA CATCATTATT ACTTAAAGGT
CATGATATTC GTACTATTCA AGAACTATTA GGTCATAGTG ATGTCAAGAC TACCCAAATA
TACACTCATG TTATTGGCGG GCATCATACT GGTGTGATAA GTCCTCTAGA CAATTTATAA
 
Protein sequence
MGQATYIEAI RAEIRVRHYS YQTEKSYLYW NRYFIRHCNI RHGDDITPAL IEHFLCFLAV 
QCKVSASTQK QALCAIIFAC RHVLKIETKE LQFPYAKTPQ RIPQVLSSDE AKLIISFLSN
YHHLIGSILF GAGLRLKEAL RLRIKDIDLS TKSIFVYQGK GQKDRVCMLP NGLVDELTLQ
MSHVKKIHDR DLVEGFGLAS LPISLIKKYR SSAAKFHWQY IFPASRRCIH PSDEYTCRHH
IHPTAFSREL RKATTKSNTN KRVTAHTFRH SFATSLLLKG HDIRTIQELL GHSDVKTTQI
YTHVIGGHHT GVISPLDNL