| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2643 |
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| Symbol | |
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| ID | 6116942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3238529 |
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| End bp | 3240577 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641634175 |
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| Product | exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_001761015 |
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| Protein GI | 170726989 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.108895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAAT CCACACAGCC CATTAAAGAT CTGCTTAAAG TCTGGGAAGT TGAGCGTTTA
ATCACGCCAC TAGACAGACA CTTTGCACTG GAGCTCGCAC TCGTTCACCA ACAACAGCTT
ACCGCTCTAG ATAAGTCGCA TAGCAGTGAT AACTCATGCA CACAAAGCTT GTACAAAGAG
GACTCCTACA GCGAACTCTT TTTACTGACC TGCGCCCTGC TCAGCAAACA ACTATCACAA
CAACACACCT GTTTGCCCAT CAAACAGATA GTGCTAGATA ACCCTATGGT GGAGCAAGTC
TCTAACTGTC AGATCACCTG TAGCCATGAT GAGTTAACCT CGCTTTTAGC GCAGTTTGCT
TGTATCGGCT TGGTCAGCCC AGAGTCACAG GTAGAACAAG TCGCGGCGGC TGCAACCCCG
ATAGTATTAG ATTGCGGCGA TCTCTACCTG CAACGCTATT ATCAATTTGA GACCCAAGTC
AGCGACACGC TCATTCAACT ATCAAAAGAG CCAGGCTCTC AAGTTTCACC AGCCACAAAA
GCAAGCTTAG ACATCCTCTT TCCTGCACCT GATGATGTCA CTGTATTTGA CTGGCAAAAA
ATCGCTACCG CCACGGCATT TAGCAAAAAG CTGGCAGTTA TCACCGGCGG CCCTGGAACA
GGTAAAACCA CAACCGTCAC TAAACTGCTA TTTTTGCTAA CCCAAGAATC GCCAATGACC
ATTAGACTGG TCGCGCCAAC AGGTAAAGCA GCCGCAAGGT TAAGTGAATC TATTAAGGCG
TCCAAGCAGC GCTTGAAGCT GGAGCTGGCT CCCTACGCAC ACCAGATTAA TCTCGATAGC
TTAACTCGAG TCCCCGAAGA GGCCTCTACC CTACACAGAT TGTTAGGGGT TATCCCCAAT
TCACACAAAT TTCGCCACCA TAAGGACAAC CCGCTCAGGC TAGATCTGCT GGTTGTCGAT
GAGGCCTCTA TGGTCGATCT GCCCATGATG CATAAGGTGT TATCGGCACT GCCAAGCCAC
GCCAGACTGA TACTGCTTGG CGATCAAGAC CAGCTTGCAT CGGTCGAGGC TGGCGCCGTA
CTTGCTGATA TCTGTGCGGG CTTAAAAGCC CGAAGTGATG CACAAAGCAA GTGGCAGATG
CGCTATTCAG CAGGTTATGC ACAAACACTG TCAACATTGA CCAGCTTTGA TCTCAGCCTC
TTTACCAGTG AATCACCAAA AATTGGTGAT AGTCTCTGCA TGTTGATGCA CAGCCACAGA
TTTAAAGGCG ATGCAGGCAT TGGCCAACTG GCCGCTGCGG TCAATAACTC CGATAAAGCA
GGTATCATGC AGGTTTGGCA GAGGGGTTAT GAGGAGCTAC TCTGGATTGA GCATCAAAAG
ACACAGTCAG GCAACACAGG TTTAGATCAA CTGCTCTCCC TCGCCGTGTC TCATTACAAA
CGCTACCTTG AACTGGCCAA AGATAATACT GCCACAGCCA CCGATATCAT CGACTCCTAT
AACGAGTTTC GCATTTTATG CGCCATGCGC GCTGGTGAAT ATGGCGTCGA TGGCATCAAC
TTAAGTGTCA CTAATGCACT AAAACAGGCA AAACTCATCA CCACTGATGT CGAGTTTTAC
CAAGGCCGCC CAGTAATAAT CCAAAGTAAC GACTATAACT TAGGCCTGTT TAATGGTGAT
ATTGGCTTGA TACTACTAGA TAATGAAAAG TCTGCGCAGA ACGGATCGGT ACCAAGGCTG
ATGGCCCACT TTATCCAAGC AGATGGTAGC ATCTTAAAAG TCCTCCCAGC CCGTCTACCC
AGCCACGATA CCTGTTTTGC CATGACAGTA CACAAGAGCC AAGGTAGTGA ATTTGCCAAC
GTAGGCTTAG TCCTGCCATT GTGGCCCAGC CTTGCTCAAA AGCAGCTGTT AACCAAAGAA
CTCGTATACA CAGCCATCAC CCGAGCCAAG CAACACTTCA CATGCCTAGG CTCACAAACC
GTCTTCGAGC ACGCCAGTCT GCAAGCCACA CAGCGCTCAT CAGGACTTGC TAGGCGTTTG
TGGCTATAG
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| Protein sequence | MIQSTQPIKD LLKVWEVERL ITPLDRHFAL ELALVHQQQL TALDKSHSSD NSCTQSLYKE
DSYSELFLLT CALLSKQLSQ QHTCLPIKQI VLDNPMVEQV SNCQITCSHD ELTSLLAQFA
CIGLVSPESQ VEQVAAAATP IVLDCGDLYL QRYYQFETQV SDTLIQLSKE PGSQVSPATK
ASLDILFPAP DDVTVFDWQK IATATAFSKK LAVITGGPGT GKTTTVTKLL FLLTQESPMT
IRLVAPTGKA AARLSESIKA SKQRLKLELA PYAHQINLDS LTRVPEEAST LHRLLGVIPN
SHKFRHHKDN PLRLDLLVVD EASMVDLPMM HKVLSALPSH ARLILLGDQD QLASVEAGAV
LADICAGLKA RSDAQSKWQM RYSAGYAQTL STLTSFDLSL FTSESPKIGD SLCMLMHSHR
FKGDAGIGQL AAAVNNSDKA GIMQVWQRGY EELLWIEHQK TQSGNTGLDQ LLSLAVSHYK
RYLELAKDNT ATATDIIDSY NEFRILCAMR AGEYGVDGIN LSVTNALKQA KLITTDVEFY
QGRPVIIQSN DYNLGLFNGD IGLILLDNEK SAQNGSVPRL MAHFIQADGS ILKVLPARLP
SHDTCFAMTV HKSQGSEFAN VGLVLPLWPS LAQKQLLTKE LVYTAITRAK QHFTCLGSQT
VFEHASLQAT QRSSGLARRL WL
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