| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2642 |
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| Symbol | |
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| ID | 6116941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3234843 |
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| End bp | 3238532 |
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| Gene Length | 3690 bp |
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| Protein Length | 1229 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641634174 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001761014 |
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| Protein GI | 170726988 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTA ATAATACAGT GAATCAGACA GGCTCTGTCC CGTTAAACAC CCTCACCTTG
CCCTTTGGTG GCAGTCGTTT GATTGAGGCC AGTGCTGGTA CAGGCAAAAC CTTCACCATC
GCAGGGCTTT ATGTGCGCCT TTTGCTCGGT CACGAGATCC CAACGCCACT GACCTGCGAG
CAGATATTAG TGGTCACTTT TACCAATGCG GCAACGGGCG AGCTTAGGGA TCGTATTCGC
CGCAAGATAC AGCTGGCCTA CCGCTGCTTT ATCGGTTTAG ATACCGGTGA TGAGTTGATT
GAGTCTCTCT ATCGACTCAC TCCTGAATCT GAGCGCCCAC TGGCACTAAA GCGACTCGAC
TTGGCGCTTA AATCTTTAGA TGAAGCCTCT ATCTTTACCA TTCACGGTTT CTGTCAGCGG
ATCTTGGCCG ACATGGCTTT TGAGTCCTCC CTGCTGTTTG AGTCAGAATT TACCTTAGAT
GACAGCGAGT TTTTGCACCA TGCGGTGCGT GATTTCTGGC GTGAGCAGTG CTATCCGCTG
CCTATCTATC TTGCTGAGAT CATACAGAAG AAATTTAGCG ACCCTGACGC CCTATCTAAG
CAGCTCAGGC CGCTACTTGG CGCGAGTCAG GCCACAGCCC AGCCGACACC TCAGCCCTTT
GAGAAACTGC AGCAGACCTT AACTCAAAGC TTAAGTCGTC TGAAACTTAT CTGGCCACGT
GAGCGTGAAA ATATCGAAGC TTTACTCCAT GCACTCCCAT TAAATGGTGT TCGATTTGGT
AAGAAGCCCG ATGGTTACCC TAAACTTGCC GTTATGCTCG ATGCCATGGA CAACTGGTGC
AAGTTCAGTG ACAGTCTGCC ACCTATGAAG GTGATGGAGT CTCTGTCACT GAGTGAGCTT
AAGCTCAATA AGGGTGGTGA AATACCAACA CCTGAGCAAG CCCCTGTGCT GGATCATATC
GAGCGTTTAT GCTCGCTTAT TAACGACTTT ATCCCAAGTT TTCTCTATTG TGCCAGAGAG
GGGATCTCAC GCCGATTTAT CCAACAAAAA TCTGAGCGTA ACCTGTTAAC CCCAGATGAT
CTACTGACTA CCTTAGAGCA AGCACTGCGC CCCAATGAGC ACGGCGAGTC CACCTTGGCT
AACACAGCTC AATTGGCCGC AACCATTGCC AAACGTTTTC CAGTGGCACT GATTGATGAG
TTTCAAGATA CCGATCCACT GCAATTCGCA ATCTTTAGCC GCATCTACCA GATGCAAGCT
AACATTCCAG CAAAGGCAGG TGCAGGTAAC TTAAGCCTGT TGATGATTGG CGATCCGAAA
CAGGCTATCT ATGCTTTTAG GGGCGCGGAT ATTCACACTT ATATTCAGGC CAGAACACAA
ACTCAAGATC ACTATAATCT CGATACCAAC TATCGCTCTA GCCGCAATAT GATTGTGGGT
GTTAACGCCC TGTTTGAGAA TCGAGACGAT CCCTTTATCA GCCAAGCGAT CCCGTTTGAG
CCTGTGCACC CCTCACCTTT TGCCGATAAA AAGGTGTTTA TCGAAAGTGG AGGCGATGAT
TCAGCGCTCA AAATTAAACT GCTTAGTGAA GATCCTGAAA AGGGGTTGAA TAAAACCACC
GCCAGAAAAC GCTTAGCGGA AGATGCCGCC GCTGAGATCT GCAGGCTGCT CACACAATCA
CAAGCTGGCG AATGCAGCAT TAGCGGTCAA CCACTAAAAG CCAAAGATAT TGCCGTACTG
GTGCGTGACA GAAATGAAGC AGCTGTGATT AAGCAGTCTT TGTCAGACAG GCAGATTGGC
GCCGTATTTT TAAGTCGTGA CAGCGTATTT AACACCTTAG AAGCCCGCGA AATGGCCTTG
GTGCTTCACG CCCTTGCGAC GCCAAAAGAT GAGCGAGCAC TGAGATCGGC TTTAGCCACT
TCACTGCTTG GCTTTGATGC GCTATCGATC CACAGTTTTA ACCAAGATGA GATGGTCAGA
CAGACCCTGC TTGAACAGTT TGATGAGCTA CATAAGAACT GGTTAAGGCG TGGAGTCATG
CCAGCACTGC TGAATCTGGC TAACGAAACT AAACTGATTG AGCGCCTACT TCAAGATGAA
GATGGCGAAC GACGGTTAAC AGATTTCAGG CACTTGGCCG AGTTATTGCA ACAAAAAGCC
ACAGAGCTTG ATGGTATTAG CGCGCTGGTG AACTGGTATG AGCAAGCGCT CATCGAAAAT
AATGCCAATG AAGAAGCACA ACTAAGACTC GAAAGTGAGC AGAACCTAGT TCAAATCGTC
ACCATACATA AGAGTAAGGG ACTCGAGTAT CCGGTCTGTT TTATCCCCTT TGTTAGCTTA
GCCAGAGACA ACCGTCGCAA GCCTGCGCCA ATGCTTTACC ATGAAAATAA CAAGTTAGTG
TGGGATATCG CGCAAAGTGA TGAGGGCTGG GAGCGGCATA AACGTGAAAA CTTAGCCGAA
GATCTGCGCC TACTCTATGT CGCCATGACC CGACCTGTGT ATCAATGTTA TCTCTATGTG
GCTAACCACA GTCGCTTTAC CAAAAAAGCG GGGATCACCA GCCAGCTCCA TGAAACTGGT
ATTGGTTACC TACTGGGCAT TGAAGATAAA GCCTGCGAGT TTTCGCGTAT TCAATCTCAG
GCGCAAAAGC TGATGGAGCA AGCCATTAGC GTCATACAGA TGGGCGATGA CGCCTCAACT
CAACCTCTGG ATAATATTTC AGATATTGAG CTCAAATTAG CCCCTAAAGA GCTCAAACGA
AAGCTATACA CACCTTGGCG TGTGGGCAGT TACTCTGGGC TGGTGAAAGA TCTGCCCCAT
GAACATATTG CCCCTGGCGC CGATGATGAA GCTTTTCCAG AGCTTGAAAT CATTCAAGAT
GAGGTCGACC CAACTCCCTC TAGATTCACG TTTGAACGTG GCGCCAATGC TGGTAGCTTT
ATGCACTTAG TACTGGAATT GATTGATTTT CCCCAAGCTG AAACTGAATT GCCCATTCAC
CTGCCGATCG CCATGGAAAA GTATGGCATA GATGAGAGCT GGTATGAGGT ACTAAACATT
TGGTATCGAG ATCTTCTAGC ATCGCCATTG GTTGCAGATG GCTCGCTAAA ACTGGCTCAA
TTAGCTCACG CGCAAAAGTT GGTGGAGATG GAGTTTTACC TGCCAATTAA TCAACTGATC
GCAGTTAAGC TTAATACTTT ACTCGAAACC CATGGTTACA GCGCAGGTTT GAACTTTGAA
TCCCTAAAGG GGATGCTCAA AGGTTTTATC GATCTCACTT TCGAGCACCA AGGTCAGTTC
TACATTGCCG ATTACAAATC TAACCATTTG GGTGATGATG TTAGCCATTA TGGCTTTGAT
GCCATGAAAG GGGCTATCCG TAGCCATAGA TACGATCTGC AGTACATCAT CTATACCTTA
GCGCTGCATC GGTATCTGCG ATTGAGAATG CCAAATTATA ATTACGATCA ACATATCGGC
GGCAGTTTTT ACCTTTTCCT GCGGGGTATG TCTACCGCAG CACCACTATC AGGTGTTTTC
TATGACAAAC CGCCTAGAGC ACTTATCGAA TCCCTCGATA CACTGTTCGA TATAGATCTA
AATGAGCCTA AGGAGCAGAT CATAGCAACA GCTCAATCAA CCCAGACAGC ACAGCCTTCA
CAGACAGATC AGATGGAGCT TAAGCTATGA
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| Protein sequence | MTSNNTVNQT GSVPLNTLTL PFGGSRLIEA SAGTGKTFTI AGLYVRLLLG HEIPTPLTCE
QILVVTFTNA ATGELRDRIR RKIQLAYRCF IGLDTGDELI ESLYRLTPES ERPLALKRLD
LALKSLDEAS IFTIHGFCQR ILADMAFESS LLFESEFTLD DSEFLHHAVR DFWREQCYPL
PIYLAEIIQK KFSDPDALSK QLRPLLGASQ ATAQPTPQPF EKLQQTLTQS LSRLKLIWPR
ERENIEALLH ALPLNGVRFG KKPDGYPKLA VMLDAMDNWC KFSDSLPPMK VMESLSLSEL
KLNKGGEIPT PEQAPVLDHI ERLCSLINDF IPSFLYCARE GISRRFIQQK SERNLLTPDD
LLTTLEQALR PNEHGESTLA NTAQLAATIA KRFPVALIDE FQDTDPLQFA IFSRIYQMQA
NIPAKAGAGN LSLLMIGDPK QAIYAFRGAD IHTYIQARTQ TQDHYNLDTN YRSSRNMIVG
VNALFENRDD PFISQAIPFE PVHPSPFADK KVFIESGGDD SALKIKLLSE DPEKGLNKTT
ARKRLAEDAA AEICRLLTQS QAGECSISGQ PLKAKDIAVL VRDRNEAAVI KQSLSDRQIG
AVFLSRDSVF NTLEAREMAL VLHALATPKD ERALRSALAT SLLGFDALSI HSFNQDEMVR
QTLLEQFDEL HKNWLRRGVM PALLNLANET KLIERLLQDE DGERRLTDFR HLAELLQQKA
TELDGISALV NWYEQALIEN NANEEAQLRL ESEQNLVQIV TIHKSKGLEY PVCFIPFVSL
ARDNRRKPAP MLYHENNKLV WDIAQSDEGW ERHKRENLAE DLRLLYVAMT RPVYQCYLYV
ANHSRFTKKA GITSQLHETG IGYLLGIEDK ACEFSRIQSQ AQKLMEQAIS VIQMGDDAST
QPLDNISDIE LKLAPKELKR KLYTPWRVGS YSGLVKDLPH EHIAPGADDE AFPELEIIQD
EVDPTPSRFT FERGANAGSF MHLVLELIDF PQAETELPIH LPIAMEKYGI DESWYEVLNI
WYRDLLASPL VADGSLKLAQ LAHAQKLVEM EFYLPINQLI AVKLNTLLET HGYSAGLNFE
SLKGMLKGFI DLTFEHQGQF YIADYKSNHL GDDVSHYGFD AMKGAIRSHR YDLQYIIYTL
ALHRYLRLRM PNYNYDQHIG GSFYLFLRGM STAAPLSGVF YDKPPRALIE SLDTLFDIDL
NEPKEQIIAT AQSTQTAQPS QTDQMELKL
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