Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2641 |
Symbol | |
ID | 6116940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3231271 |
End bp | 3234843 |
Gene Length | 3573 bp |
Protein Length | 1190 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641634173 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001761013 |
Protein GI | 170726987 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.144342 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCTATC TTGTTCAATC GAATCGAATG GAAGCCCTTT CTGCTCAACT GGCGCAGGAG TTACAAACCC CCATTCCCGG TATGCCATTA CTGATGCCGG AGCAGATATT GGTACAGAGC CCAGGGATGT CCACTTGGTT AAGGCTTGAG ATCGCCAGCA AGAACAAGAT AGCTGCCGCA TTGGAGTTTC CTCTGCCTTC GAGCTTTATT TGGCAACTTT GCCACATTTT ACTGCCCGAT GTACCTAAGG AAAACGCCTT CACCAAACCT TCGATGACCT GGAAATTGAT GGAGTTGCTA CCCGAGCTGC TCGATATTGA AGAGTTTGCT CCCCTTAAAA ACTATCTCAA TCCCAACCTA AACTCAGTTT CTGAGCAGAG CTCTGATAAT GAGCTAGATG AGAGGCCTGA AGAGCCACTC AAGCTGTTTC AGCTTTGCGG CCAGATAGCG GATATCTTCG ATCAATACTT GGTATATCGC CCCGACTGGA TAGCTGCTTG GGAGGCCAGC GAGCCCACAT TACCACCAAA AGGTGAAAAA CTCGCGCCAG CTCAAGCTTG GCAACCTATA TTGTGGCGCG CGCTTATCAA GTTTAATAAC GAGCGATTGA ACAAGAGCCG CTACCACAGA GCCAACCTAC ACCAATCTCT GTTTGATGCC CTTGATGATC CCAACACCTC CCTTGAAGGC TTACCAAGAC GCTTATTCGT ATTTGGGATC TCCTCCATGG CGCCACAAAC CTTAGATGTG CTCTATCATC TGGCCAAGCG CATCGATGTG ATCATGTTGA ATTTAAGTCC CTGTCAACAC TACTGGGGCG ATATTATCGA TCCACGCCTG CGTGCTCGTA TGGCGCTGGA GTACGCCAAT AAACATAAAC TCGAAGCCCA GTGGGAAGAT AAACTTGAAG TGGGTAATCC CCTGCTTGCC AATAATGGCA AGATGGGACG TGAACTGCTG GATCTGATTT TAGAACTCCC CGAGGAGCAC ACCAACTTTA ACTTCGAATG TTATCAAGAC CCAGGGGTTA AAAACCTACT TCAAGGTGTA CAGCGAGACA TTCTTGAGCT TGAAACCAGA GGCAGAAGCT TAGGCCCTGA TGCCTCACTG TATCTAACCC TCGATGGACG CCGTCCACTG ACAATCGATG ATGACTCGCT GACGTTAAGA AGCTGTCATA GTCCACTACG AGAGATTGAA ACTCTGCACG ATCATCTGCT GGAGATGCTC TCACGGGAAC CTGTCGATCC CAATGATCCT TTGCTTGCCA AAGATATCGT TATCATGCTG CCAGATGTAG CAGCCTACGC CCCCTATATC GACGCTGTTT TCTCGGCCAA ACAGGGCGCT CACTATATCC CCTACGCCAT TGCCGACCGA GGTGCAGCGC AGGAATCACC GCTGATCAAC AGCTTTCTTA ATATCCTCGC CATCAACCAG AGCCGCTTCG CCCTCACTGA CATCTTAGGG ATTTTAGAGG TACCTGCAGT ACTCAGGCGA TTCGAGCTCG ATGATGATGA CTTGATGATG ATACGCCAGT GGCTAGAGCA AGCTGGCGTG CGTTGGGGAC GAGATGAAAC CAGCAGAGCG GCACAGTCTC TGCCAGCATT CGATAAAAAC TCCTGGGCAT TTGGCATTAA ACGTCTCATT TTAGGCTACG CATTTAGCGA TGATGCGCCG CTCTATCACG ACACCTTAAC CGTTATGGGG ATCGAGGGGC AGTCGGCTCA AGCATTAGGC AAGCTACTCA ACTTCATCGA AGCCTTAGAT GAATACCGTC TACAACTTGG CCAAACATGT GAAATTGAAG TGCGTATGGC CCAGCTCAAT CAGCTACTGG ATGATTTTTA TGAGGTGGAT GATGAAGAGC GCATGCAGCT ACAAGCTATA CGTGAAGCGA TCAGCAAATT AAAAACTGAG CTGTCTGATG CAGGTCAAAT CACGCCGCTA AACACGCAAG TACTGCAAAA CTGGTTTAAC AGCACCCTGA GTGAGTCTCG TGTCGGCCAA CGATATCTGG CCGGTAGCGT TAACTTCTGC ACCTTAATGC CGATGCGATC CATTCCTTTT AAGGTGGTGT GTTTAGTTGG CATGAACGAT GGTATCTATC CTAGGGTTCA GCACCCAGTA GGCTTTGATC TGGTGGCGCA GTTTGGCCCA CGCAAAGGCG ACCGTTCACG CCGTTTAGAT GACAGATACC TATTTTTAGA AGCGATACTC TCAGCCCGTG AGCAACTTTA TATCAGCTAT ATTGGCCACA GTGAGCGCGA TAACTCCGAG CGGATCCCCT CAATGCTGGT CTCTGAACTG GTTGAGTATT GCCAGCTCTG TTACCTGCCA GAGACATTCA ACAAACTCGA CTCGAGTGAT GCTGAAACCG TTATCAAGGT GATCCCTGCT ATTGAAAAGG CAGTTCACCA GCAGTTGTTA ATTGAGCAGC CACTGCAACC TTTCGATGAG CGCCTTTATG TAAGTCCGGC CTCAGAGATT GACGGCGCAA TTCAACTCAA ACAGAGCTAC TCGGCCCAGT GGTGCCCGAC CAAAGCTGCA GGCCAATCAG CAGATGGTCT CGAACGTACT CCACGGTTTA TTGATAATGG GGTTACTATC ACCCAAGCTA CAGAACTGGC CGACAGTCTA GATAGCCAGG AGCTAGAGAT CTCGGCGCTT ATCCGTTTTT TCAGAAATCC AGCCCAATAC TTTTTCAATC GCACTCTTAA GGTCGACTTG GGGCTTAATA TTCAAGCTGA CGATAACGAT GAGCCCTTTA ATCTCAATGC CTTAGAGCGT TATAAGCTAC AAGCTAATCT ACTCGATAAC GCGATTGAGC AAAAACTGGA AGCCCCAGAC GAAACGCTAT TACAGCGACT CAAAGCCGGT GGTGAGCTGC CACTCGCCCC CTTTGACGAC CTACTTCTGG GCAATTATCT GCACGACATT AAGCCCTTAA TTGGCCGCGC TCTATATCTG CAGGGAGAGA ATCAAAAATC ACTGGATATC GACCTTGCCT TTACTGCCCA AGATGGCCTC AATGAAGCCA TCACACTGGT CGGACGCATT GACGACCTCT GTGCTAAGGG CTTAGTGAAC TACCGACCCG GTACCGCCAA CGGCCGTGAT TTAATTCGCG TCTACCTAAG GCATTTGTGT ATCTGCGCCA TGGGAGAGAA TAAACAGCAT ACCAGCTATC TACTGGATAT CGGCCACTTC CATGCATTTC ACGGCGTCAC CCCAGAGCAA GCACGGGCGC AGCTAAGCCT TTGGTTAAGT CTGTTTCAAT CAGGACAACT GCATCCATTA ATGTTTATGC CCAGAACCGC CCTCGCCTAC GTTGAAGCCG AAGGGGAACA TGCAGATAAA CTTATCGAGG CTCAAAGTCA GTGGATAGAT GAGCAGAGTC AATTAGGTGA AGGGTTTGAG CCTCACTATC AGCGGCTCTT TAGTTTTCCT GAAGACTTTA CAGAAGTACA ATTTGGACTC ACTGCCATGA CGCTCCTCTC TCCCATGCTC AGCCTTTATC ACAAAGACAG GCTGAGTGAA CTCACTGCTT TTGTCGAAGG GGGAGCACAG TAA
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Protein sequence | MLYLVQSNRM EALSAQLAQE LQTPIPGMPL LMPEQILVQS PGMSTWLRLE IASKNKIAAA LEFPLPSSFI WQLCHILLPD VPKENAFTKP SMTWKLMELL PELLDIEEFA PLKNYLNPNL NSVSEQSSDN ELDERPEEPL KLFQLCGQIA DIFDQYLVYR PDWIAAWEAS EPTLPPKGEK LAPAQAWQPI LWRALIKFNN ERLNKSRYHR ANLHQSLFDA LDDPNTSLEG LPRRLFVFGI SSMAPQTLDV LYHLAKRIDV IMLNLSPCQH YWGDIIDPRL RARMALEYAN KHKLEAQWED KLEVGNPLLA NNGKMGRELL DLILELPEEH TNFNFECYQD PGVKNLLQGV QRDILELETR GRSLGPDASL YLTLDGRRPL TIDDDSLTLR SCHSPLREIE TLHDHLLEML SREPVDPNDP LLAKDIVIML PDVAAYAPYI DAVFSAKQGA HYIPYAIADR GAAQESPLIN SFLNILAINQ SRFALTDILG ILEVPAVLRR FELDDDDLMM IRQWLEQAGV RWGRDETSRA AQSLPAFDKN SWAFGIKRLI LGYAFSDDAP LYHDTLTVMG IEGQSAQALG KLLNFIEALD EYRLQLGQTC EIEVRMAQLN QLLDDFYEVD DEERMQLQAI REAISKLKTE LSDAGQITPL NTQVLQNWFN STLSESRVGQ RYLAGSVNFC TLMPMRSIPF KVVCLVGMND GIYPRVQHPV GFDLVAQFGP RKGDRSRRLD DRYLFLEAIL SAREQLYISY IGHSERDNSE RIPSMLVSEL VEYCQLCYLP ETFNKLDSSD AETVIKVIPA IEKAVHQQLL IEQPLQPFDE RLYVSPASEI DGAIQLKQSY SAQWCPTKAA GQSADGLERT PRFIDNGVTI TQATELADSL DSQELEISAL IRFFRNPAQY FFNRTLKVDL GLNIQADDND EPFNLNALER YKLQANLLDN AIEQKLEAPD ETLLQRLKAG GELPLAPFDD LLLGNYLHDI KPLIGRALYL QGENQKSLDI DLAFTAQDGL NEAITLVGRI DDLCAKGLVN YRPGTANGRD LIRVYLRHLC ICAMGENKQH TSYLLDIGHF HAFHGVTPEQ ARAQLSLWLS LFQSGQLHPL MFMPRTALAY VEAEGEHADK LIEAQSQWID EQSQLGEGFE PHYQRLFSFP EDFTEVQFGL TAMTLLSPML SLYHKDRLSE LTAFVEGGAQ
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