Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2625 |
Symbol | |
ID | 6116924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3209141 |
End bp | 3211144 |
Gene Length | 2004 bp |
Protein Length | 667 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634157 |
Product | transglutaminase domain-containing protein |
Protein accession | YP_001760997 |
Protein GI | 170726971 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.253988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.029419 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAATG AGCACAGCGA GATCATATCT CGGCACAGCT TGTTATGGTT GCTACTGGCA AATGTAGCAA TACTGGTTCC TCTGTATGAG AAACTCACCC CATGGACAAT GGCCATATGC GGGATCTGTC TACTATGGCG ACTGGGCATA TTTATCGGTA AAGTCGCCAA ACCGCCACGC TATTTAGTCA CCTTCTTAGC CTTAGGCTCA GCCATCACCC TCGCTTTAAT TATCAGTAGC ATAGGTTTAT TGAACGGGCT AATCAATCTA CTTGTTTTAG GCTATGCGCT GAAATACATA GAGATGAGGA AAAGACGAGA TGTGAGAACG GTTGTCTTGG TAGGCTATTT TCTTATTGCC CTTACCTTTA TCAATCAGCA ATCCATCATC TACACGTTAA TCTTGGGTCT TGTTACCACC ATCAACACTT GTGTGCTGGT TAGTCTGTAC CATGAGGGCA ATAAGCTAAA AGAAACGGCT TTAATGGGAA GTAAACTTAT CATACAAAGC CTACCTCTGG CCGCCCTACT TTTTATTGTG CTCCCTAAAC TCCCTCCCCT GTGGATGGTG CCACAAAACG GCTCCGCAAC AACCGGGTTA TCAGATGAAG TCAGTTTTGG GGATATTGAG AAGCTCACTC GTTCAGCAGC TCTGGCATTT CGCGCCGAGT TTGATAGGTC TCCTCCCGCC AATCATCTTC TGTATTGGCG TGCGCTGGTT ATGGAAGATT ATGATGGCAA AATTTGGACT CAACATAAGA GTATCAAACA TATAGAAAAA GATGTTCAAT TTACCGTTTC AGGCAGAGTT CGTCCTTCAG GAAATCCCAC CAATTATAGC GTTATCGCAG AGCCTAGCTA TCAAAACTGG TTATATGGAC TCGATGTCGC CTTTAGTGAT GACAGTAACA TCAGTAATCT GCCCGATTAC CGCCTCTATG CAAAACGCTC TGTTGATCAG CAATACCGCT ACCGAGTTCA ATCCTACCTC AAATCCCCTA TGAGTCCAGT TCTTGACAAT AAGGTTAAGC GGATAAACCT TTCACTACCA GAAGCAAGCA ACTTGAAAAC CCAGGCCTTT GCTAATCAAT TGCTGTTGAA GTACCCAGAT CCGCTTCAGA GACTAAATGC ACTAATGAAC TACTTCAACC AGGAGGATTA CTTTTACACC CTCTCACCTC CTCGAGTCGG ACCACAACAG ATTGACGATT TTCTTTTTGA AAACAAAGCT GGTTTTTGTG TTCATTACGC CAGTGCTTTT ACCTTTATAG CCAGAAAAAC TGGCATTCCT GCCAGACTCG TCACAGGCTA TCAGGGCGGA GAGTGGAACC AGCAGGCAGG CTACCTGAGT GTTTATCAGT ATATGGCTCA CGCTTGGACG GAGGTTTGGC TAGAGGGTAA AGGCTGGGTT AGGTTTGATC CTACCGCGAT GATCGCACCT CAGCGTGTAT TAGAGGGGTT CGATGCCATC TTTGAACCTG AATCAAGTTA TCTGTTGGAC AGCCCCTTTA GTCCATTAAG GTTAAGAGAG TTTCCTCTAC TTAATAAACT AAGACTCTCT TTAGCCAGCA TGGATTACTA CTGGAGCGTT TGGGTGCTCG GTTTCGATGC CAATAAACAG CAACGTGTGC TTCAAAAGCT GCTAGGAGGG GTGACTAAAC AGAAGATGTC CCTGTTTATG TTGATAGCAA TATCACTCAT CGGTCTCACC ATTGCTTATA GTGCTGGTCT ACTCACCTTT CGTAAACGTG GCGAGCAATA CGCAACAAAA TACACACAGA TATGCAACAA GCTAAATAAT AAAGGCCTAG AGAGAAGGCT AGATGAAGGG CCGCTTGATT ATGGTAAAAG GGTTGAATTA GCCATGCCCG CTCTTGCTAA TGAGTTTGCA CTCTTCACCC AATATTACAT TGCACTAAAA TACCAACCTC TTACCAAACA GGGTCAAAAA AAGATTTCTA AACTGTTTTT ACGTCTCTTT AAACAGATCA GGAAAAAACT TTAA
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Protein sequence | MSNEHSEIIS RHSLLWLLLA NVAILVPLYE KLTPWTMAIC GICLLWRLGI FIGKVAKPPR YLVTFLALGS AITLALIISS IGLLNGLINL LVLGYALKYI EMRKRRDVRT VVLVGYFLIA LTFINQQSII YTLILGLVTT INTCVLVSLY HEGNKLKETA LMGSKLIIQS LPLAALLFIV LPKLPPLWMV PQNGSATTGL SDEVSFGDIE KLTRSAALAF RAEFDRSPPA NHLLYWRALV MEDYDGKIWT QHKSIKHIEK DVQFTVSGRV RPSGNPTNYS VIAEPSYQNW LYGLDVAFSD DSNISNLPDY RLYAKRSVDQ QYRYRVQSYL KSPMSPVLDN KVKRINLSLP EASNLKTQAF ANQLLLKYPD PLQRLNALMN YFNQEDYFYT LSPPRVGPQQ IDDFLFENKA GFCVHYASAF TFIARKTGIP ARLVTGYQGG EWNQQAGYLS VYQYMAHAWT EVWLEGKGWV RFDPTAMIAP QRVLEGFDAI FEPESSYLLD SPFSPLRLRE FPLLNKLRLS LASMDYYWSV WVLGFDANKQ QRVLQKLLGG VTKQKMSLFM LIAISLIGLT IAYSAGLLTF RKRGEQYATK YTQICNKLNN KGLERRLDEG PLDYGKRVEL AMPALANEFA LFTQYYIALK YQPLTKQGQK KISKLFLRLF KQIRKKL
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