Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2575 |
Symbol | aspS |
ID | 6116872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3148619 |
End bp | 3150406 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634105 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_001760947 |
Protein GI | 170726921 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000163507 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000702641 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCGCAGTC AATATTGTGG AGACGTTAAT AAGTCTCACG TTGGACAAGA AGTAACCTTA GTAGGTTGGG TAAACCGTAG TCGTGATTTA GGCGGGGTTG TTTTTCTTGA TCTACGTGAT AGAGAAGGCA TAGTTCAGGT TGTTTATGAT CCTGACTTAC CTGAGGTGTT CGATGTCGCA AGTACACTAC GCAGTGAATT TTGTGTTCAG GTAACCGGTT TAGTTCGTGC GCGTCCAGAT AGTCAAGTTA ATCAGGATAT GCGTACCGGT GGGATTGAGA TCTTAGGTAA AGGCTTAACT ATTCTAAACA GCTCAGCGCC TTTGCCGATT AACATGGATA AGAATCAGCA CAACACTGAA GAGCAAAGAT TAAAATACCG TTATTTAGAT CTACGCCGCC CTGAGATGGC TGATCGTATT GTATTTCGCT CTAAAGTGAC CAGTGCAGTT CGTCGTTTCC TTGATGACAG TGGCTTCCTA GATATCGAAA CCCCTATTTT GACTAAGGCG ACACCTGAAG GTGCCCGTGA CTATCTAGTG CCTAGCCGCA CATATAAAGG TCAATTTTTT GCGTTGCCAC AGTCACCACA ACTCTTTAAG CAGTTGTTGA TGATGTCAGG CTTTGATCGT TACTATCAGA TTGTTAAGTG TTTCCGTGAT GAAGACTTAC GTGCTGACCG TCAACCTGAA TTTACTCAGA TAGATATCGA AACTTCATTT ATGTCATCTG AGCAAGTGAT GGCTAAAACT GAAGAGATGG TTCGCGGTCT CTTTAATGAC CTATTAAATG TCGACTTAGG CGAATTCCCT AAGATGACTT TTGCAGAAGC GATGCGTCGT TTTGGCTCAG ACAAGCCTGA TTTACGTAAC CCGCTAGAGC TGATTGATAT CGCAGATATC GTTAAAGAGG TTGAGTTTGC AGTATTTAAT GGCCCTGCAA ACGATCCAGA AGGTCGCGTT GCAGTACTAA GCATTCCTGG TGGCGCTAAA CTGTCACGTA AGCAGTTAGA TGAATACGCT AAGTATGTGA CTATTTACGG TGCCAAAGGT CTGGCTTGGA TGAAGGTTAA TGATCTTGAC CAAGGCATGG AAGGCATTCA GTCTCCAGTA CTAAAGTTCC TAAGCGAAGA CGTGGTTAAA GCGTTACTTG ATCGTACTGG CGCACAAACA GGCGATCTAA TCCTATTTGG CGCAGATAAA GCGAACATAG TTGCAGAAGC TATGGGCGCA CTTCGTCTTA AAGCTGGCGA AGACTTTGAC TTACTACAAG GCGAGTGGAA ACCACTTTGG GTTGTTGATT TCCCTATGTT TGAAAGAACA TCTGATGGCG GCTTACATGC AATGCATCAC CCGTTCACTG CGCCAACAGG CATCAGCCCT GAGCAACTTG AAGCGGATCC AACTGCTGCT ATCTCTGATG CTTATGACAT GGTCCTAAAT GGCTGTGAGC TAGGTGGTGG TTCTGTGCGT ATTCACAATA GTGAGATGCA ATCGGCAGTA TTTCGTATCT TAGGTATCGA AGAGGAGGAA GCAAATGAGA AGTTTGGTTT CCTACTTGAA GCGCTACGTT ATGGTACGCC TCCTCATGCG GGACTTGCTT TCGGGTTAGA TCGCATCATC ATGTTGATGA CTGGGGCAAG CTCTATTCGT GATGTGATGG CATTTCCTAA GACCACCACA GCAGCGTGTC CGCTTACCAA TGCGCCGGGG TTTGCAAATC CCGCACAACT CATTGAACTT GGTATTGAGG TTATCGAAAA CCAAGAGAGT AAAGAAGAGC AAGCATAA
|
Protein sequence | MRSQYCGDVN KSHVGQEVTL VGWVNRSRDL GGVVFLDLRD REGIVQVVYD PDLPEVFDVA STLRSEFCVQ VTGLVRARPD SQVNQDMRTG GIEILGKGLT ILNSSAPLPI NMDKNQHNTE EQRLKYRYLD LRRPEMADRI VFRSKVTSAV RRFLDDSGFL DIETPILTKA TPEGARDYLV PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF MSSEQVMAKT EEMVRGLFND LLNVDLGEFP KMTFAEAMRR FGSDKPDLRN PLELIDIADI VKEVEFAVFN GPANDPEGRV AVLSIPGGAK LSRKQLDEYA KYVTIYGAKG LAWMKVNDLD QGMEGIQSPV LKFLSEDVVK ALLDRTGAQT GDLILFGADK ANIVAEAMGA LRLKAGEDFD LLQGEWKPLW VVDFPMFERT SDGGLHAMHH PFTAPTGISP EQLEADPTAA ISDAYDMVLN GCELGGGSVR IHNSEMQSAV FRILGIEEEE ANEKFGFLLE ALRYGTPPHA GLAFGLDRII MLMTGASSIR DVMAFPKTTT AACPLTNAPG FANPAQLIEL GIEVIENQES KEEQA
|
| |