Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2562 |
Symbol | |
ID | 6116859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3134259 |
End bp | 3134897 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634092 |
Product | endonuclease III |
Protein accession | YP_001760934 |
Protein GI | 170726908 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0177] Predicted EndoIII-related endonuclease |
TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.560783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0252184 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAG AGAAACGACA AGCGATCTTA TCGATCCTCA GAGAAAATAA CCCTCACCCT GAAACTGAGC TAAATTTTTC GAGCCCCTTT GAGCTACTTG TCGCTGTGAC TCTGTCAGCT CAGGCTACCG ATGTTAGCGT TAACAAAGCA ACAGATAAGC TCTTTCCCAT CGCAAATACT GCCCAATCTA TCTACGCGTT AGGGGTTGAT GGACTCAAAG AGTATATAAA GACCATTGGC TTATACAATA ATAAAGCAAT TAATGTCATC AAGGCATGTG AGATATTAAT CGAGAAGTAT AATGGTGAAG TACCTGAAGA TCGTGAGGCA TTAGAGTCCC TTCCTGGTGT TGGTCGTAAA ACCGCAAATG TTGTACTAAA CACAGCTTTT GGCTGGCCAA CTATCGCTAT TGATACCCAT ATTTTTCGTG TCGCCAACCG CACAAAATTT GCCATGGGGA AAAATGTCGA TCAGGTTGAA GAGAAGATGT TAAAAGTCGT TCCTGCGGAG TTTAAGGTTG ATGTACACCA CTGGTTTATT CTCCATGGCC GCTATACCTG CGTTGCCCGC AAACCTCGTT GTGGCAGCTG TCTAATCGAA GAGCTGTGCG AGTTTAAAGA GAAGGTCTAT CCTGAGTGA
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Protein sequence | MNKEKRQAIL SILRENNPHP ETELNFSSPF ELLVAVTLSA QATDVSVNKA TDKLFPIANT AQSIYALGVD GLKEYIKTIG LYNNKAINVI KACEILIEKY NGEVPEDREA LESLPGVGRK TANVVLNTAF GWPTIAIDTH IFRVANRTKF AMGKNVDQVE EKMLKVVPAE FKVDVHHWFI LHGRYTCVAR KPRCGSCLIE ELCEFKEKVY PE
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