| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2559 |
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| Symbol | rnfD |
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| ID | 6116856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3131802 |
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| End bp | 3132854 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634089 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001760931 |
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| Protein GI | 170726905 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.055004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTA AAATTGCCTC TTCGCCTCAC TTGAGCCGAA ACTTTCAAAC CAGCACGTTA
ATGCAACGCG TAATACTCTG TACGCTTCCA GGTGTGGCCA CCCAATGTTA TTTCTTTGGC
TGGGGCGTAT TGATACAGGT AGCGCTAGCT ATCACTGTAG CCCTAATCAG TGAAGCCATT
GTACTTCAAC TGAGAAAGCG TCCAGTAACG GACACATTAA AAGATAACAG CGCCCTGCTT
ACCGCATTGC TTTTAGGCAT AGCTATCCCG CCACTTGCTC CTTGGTGGTT GACTGTCATG
GGTGTGCTTT TCGCTATAGT GATCGTAAAA CATCTCTATG GAGGGCTTGG ACATAACATT
TTCAACCCTG CGATGGCAGG ATATGTGATG CTACTTATCT CATTCCCTGT TCAGATGACG
AGCTGGGTTG CGCCAATGAT GTTGGCCAGC CAACCAGTTG ATCTATTAGG TTCGTTGCAA
CTGATATTTC TTAACCCTTC AGCCAGTGAG ATAGAAGCCT ATAAATTGGG CTTTGACGGC
GTTGCTATGG CGACCCCGCT TGATACCATC AAGACAGATC TTTCCATGGG ACTCACTAGC
ATAGAGAGCC TAACCAAATC CATCTTCAAT GACGGCTTTG GCGTAGGTTG GTTCTGGGTC
AACATGGCTT ACTTGGCAGG TGGTTTGGCG ATGATAAAGC TTAACCTCAT ACGTTGGCAT
ATTCCCGTGG GAGTACTGGC AAGTTTGTTT ATCTGTGCCA GTGTAGGATA CCTGCTCAAC
CCAGATACGC ATGTTGGCCC CTTGCTTCAC CTCTTCAGTG GTGCAACTAT GTTGGCGGCC
TTCTTTATTG CAACCGATCC CGTCACTGCT GCAACCAGTG TTAGGGGACG TTTGCTATTT
GGCGCATTAA TAGGGGTTCT CGTTTACGTG ATCCGAACCT ATGGTGGCTA TCCAGACGCA
TTTGCATTCG CTATCTTATT AGCCAATCTT TGTGCACCGT TTATCGATCA CTACATTAAG
CCCCGAACCT ATGGTCACAG ATCAAGAAGT TAA
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| Protein sequence | MAFKIASSPH LSRNFQTSTL MQRVILCTLP GVATQCYFFG WGVLIQVALA ITVALISEAI
VLQLRKRPVT DTLKDNSALL TALLLGIAIP PLAPWWLTVM GVLFAIVIVK HLYGGLGHNI
FNPAMAGYVM LLISFPVQMT SWVAPMMLAS QPVDLLGSLQ LIFLNPSASE IEAYKLGFDG
VAMATPLDTI KTDLSMGLTS IESLTKSIFN DGFGVGWFWV NMAYLAGGLA MIKLNLIRWH
IPVGVLASLF ICASVGYLLN PDTHVGPLLH LFSGATMLAA FFIATDPVTA ATSVRGRLLF
GALIGVLVYV IRTYGGYPDA FAFAILLANL CAPFIDHYIK PRTYGHRSRS
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