| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2558 |
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| Symbol | |
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| ID | 6116855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3129444 |
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| End bp | 3131798 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634088 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_001760930 |
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| Protein GI | 170726904 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0669031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAACTT TATTGGAACA GATTGATAAA GGGACACTTT GGCGCGCCAT TGGTGGTATT
CATCCACCTG AGCAAAAAGT GCTCTCAAAC ACCACAAACA TAGCATCTTT ACCTATTGCT
GATGAGTATG TGATCCCCAT ACCTCAAGTG GGTGATAATG CGACATTGTC GGTCTCTGTC
GGTGATTATG TGACTAAAGG TGAAGTATTA ACCAATGGCA GCCATTTTGG CTACCTGCCA
GTTCATGCCC CCACATCTGG CCATATTAGC CATATTGAGC AACGCCCAAG TAACCACGCA
TCTGGCCTGC CAGTACTTAG TTGTGTAATA AAGCCTGATG GACTAGACAC CTTAAGTGAT
AAGGTTCACC CTAAGCTTGC ACTTACTGAT ATTGAGCACT TATCGAACCA AGAGATATTG
AGTAAGATAC AACAAGCGGG TATCGCGGGC TTAGGTGGAG CAGCTTTCCC AAGTCATATT
AAGCTCAACC CAGCCAGTGA TATCGAGTTA CTGATCATTA ATGCGATAGA GTGTGAGCCT
TATATCACCT CTGATGACAT GATAATGAGA GAGCAAAGCG ATGCCATAAT GCAAGGTATC
GCTATTGTCC ATAGGCTGTT AAAGCCTAAA CGACTTATCA TCGCTATAGA AGATAATAAA
CCTCAAGCCA TCTCGATAAT GCAGCAAGCC TTAAGCCGCA GCGTATTGCC AGAGGATGGA
GTTAGGATCA CAACCCTACC AACCCTCTAC CCCTCTGGTG GTGAGAAACA GCTTATTCAG
ATCTTAACTG GACAGGAGGT GCCTTCTGGC GCCATTCCTG CTCAGCTCGG TATTTTAGTT
CAAAATGTCG CCACCTGTTA CGCAATTCAA GATGCCGTTT TGCGAAACTA CCCTCTCATT
GAACGCGTGG TGACCATTAC AGGCAATAAT GTGGCTAAAC CTGGCAACTA TTGGCTTCCA
ATTGGTACTC CTATCTCTCA CCTTCTGTCT CAAACTGATT TTAAAGGCTT GGATACGGAC
AAGGTGATCA TCGGTGGCCC TATGATGGGT TATGCACTTT ACAATGATAG CGCCCCTACA
CTTAAAGGCA CTAACTGTAT CCTGCTGCCT AATGCTAATG AGATGGCCCC AGAGCAGAAG
GAACTCCCCT GTATTCGTTG TGGTGAATGT GCCGTAGTCT GCCCAGCTCA ACTTTTACCT
CAACAACTCT TCTGGCATTC AAAAGCACAA GAGTATGATA AAGCGGTGAG TTATAACCTC
AATGACTGTA TTGAATGCGG CTGCTGTAGC TATGTTTGTC CAAGTAATAT TCCTTTAGTC
GAGTATTACC GCGTCGCCAA GTCTGCGGTC AAAAATGAAA TTGAAGAGAA GAAGCAAGCA
GAGCTAGCTA AACAGAGGTT TGAGCTACGC ACACAGCGCC TTGAAGATGA GAAGCTCGCC
CGTGAAGCTA AGCAAAAAGA GGCTGCTGAT AGACGTAAAG CCAATATGTC TGGCACGGAT
AAAGATGCCG TCGCTCAGGC TATGGCCAGA ATTAAAGCCA AAAAAGAGGC TGAAGCAAAC
AGTGAAGTGA CAACCTCAGC ACCAGCAGAT AAACGCGATG CTGTCGCAGC TGCAGTTGCA
CGAGCAAAAG CGAAAAAAGC AGCTCAAACA TCCACTGAGA AGCTTGAATC CTCAACAACA
GAGGAACCAG TCGACGATAA AAAAGCCAAG GTAGCGGCAG CAGTCGCCCG GGCTAAAGGC
AAAAAAGCAG CACTTAAATC GGCAGATGCT AGTACTATTG AGCCAAAAAC CGATATAGCA
ACATCAGAGC CAGCAATCGA TGCGCCTGTT ATCGATGTCG ATGACAAAAA AGCCAAGATA
GCAGCTGCTG TGGCCCGTGC TAAAGCCAAG AAAGCAGCAC TTAAGGCAGC TGATGCAAGT
GCTACTGAGC CGCAAAGTGA TTCAGAAACA TCAGAGGTAA TACCGGATAC TTCAGTAGCT
CAAATCGATG ACAAAAAAGC CAAGATAGCG GCTGCTGTTG CCCGTGCAAA AGCAAAAAAA
GCAGCGCTTA AAGCAGCAGA TACAAGCATT AAGCACCAAA ATGATGCCGA AGCATCAGAG
TCTGTACCCG ATACTCCAGT TGTAGAAGTC GACGACAAGA AAGCAAAAAT TGCAGCTGCT
GTAGCTAAAG CTAAGGCCAA GAAAGCGGCA CTTAACGCTA TTGATCCGCA AAACGATTCA
GCAACTTCAG AGCCTGCAAC CGATGCCCCA ATAGCTGATG TTGATGACAA AAAGGCCAAG
ATAGCCGCTG CTGTGGCAAA AGCAAAGGCT AATAAATTAG CCAAGCAAGC AAAATTAGAT
AATGGGAAGG ACTAA
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| Protein sequence | MLTLLEQIDK GTLWRAIGGI HPPEQKVLSN TTNIASLPIA DEYVIPIPQV GDNATLSVSV
GDYVTKGEVL TNGSHFGYLP VHAPTSGHIS HIEQRPSNHA SGLPVLSCVI KPDGLDTLSD
KVHPKLALTD IEHLSNQEIL SKIQQAGIAG LGGAAFPSHI KLNPASDIEL LIINAIECEP
YITSDDMIMR EQSDAIMQGI AIVHRLLKPK RLIIAIEDNK PQAISIMQQA LSRSVLPEDG
VRITTLPTLY PSGGEKQLIQ ILTGQEVPSG AIPAQLGILV QNVATCYAIQ DAVLRNYPLI
ERVVTITGNN VAKPGNYWLP IGTPISHLLS QTDFKGLDTD KVIIGGPMMG YALYNDSAPT
LKGTNCILLP NANEMAPEQK ELPCIRCGEC AVVCPAQLLP QQLFWHSKAQ EYDKAVSYNL
NDCIECGCCS YVCPSNIPLV EYYRVAKSAV KNEIEEKKQA ELAKQRFELR TQRLEDEKLA
REAKQKEAAD RRKANMSGTD KDAVAQAMAR IKAKKEAEAN SEVTTSAPAD KRDAVAAAVA
RAKAKKAAQT STEKLESSTT EEPVDDKKAK VAAAVARAKG KKAALKSADA STIEPKTDIA
TSEPAIDAPV IDVDDKKAKI AAAVARAKAK KAALKAADAS ATEPQSDSET SEVIPDTSVA
QIDDKKAKIA AAVARAKAKK AALKAADTSI KHQNDAEASE SVPDTPVVEV DDKKAKIAAA
VAKAKAKKAA LNAIDPQNDS ATSEPATDAP IADVDDKKAK IAAAVAKAKA NKLAKQAKLD
NGKD
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