| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2547 |
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| Symbol | |
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| ID | 6116831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3114874 |
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| End bp | 3117042 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634064 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001760919 |
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| Protein GI | 170726893 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.383488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0994855 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGAAGC GTAAGTATCA GCACTTATTA GAGTTGATTG TTAACTCTGA AGCTAAACAG
ATGGGTGATT TTCACAGCAC GGCTAAACTG GCTGCTGAAT TACTCTGTCA GCAGCTATTA
GTGACTCATG TGGGTGTGGC AATCATCTCT TGTGAGAATA ATACCATCTT GCCTGTGGCT
AATTACGGCC ATATTTCACC TGCTGAATTT CTACGTCCAG CCCCAGACTT ATGCCCAAAA
TATATTGCAG AGTTAAGGAC AAAGCGCCTT ATCGATGCTT TTGATACCCG CAATGACTCC
AGACTCTGTG AGCTCTCATC TAATTATTTT ACATCTAATG GTGTTAGGTC GACGTTAGAT
ATTGCGATTC GGATCAATGG TCATCTGGAA GGGGTGTTGT TTCTCGAGAG AATGGCGTTT
TCCCATTGGT CTGATAGCGA AATACAGATA GCTTCTCAAG TTGCAGACCA ATTAGCACTG
ACACTCGCCA CGCGTGATGC TTACGATAAA GAGGAGAAGC TTACGCTGCT ATTGAATGCT
GCTGAGCATT CAGATCAAGT CACTATGCTG ATCAATCTGA AAACAGAAGT AGTTGAATAT
GTTAATCAAG CGCACGAGAC CATTACAGGA AAACCCAAAT CCAGTGTGAT AGGAAGCTCG
CTACAGGAGC TGAGTTTTGT TAGCCAACAC CCGGATGAGA CCAGAGTTGC ACTTACCCAA
GTAAAACTTG GTAGTGTGGT TAAAGGCGAA AACAAAATCG TTAAGCAAGA TGGCTCTCAA
AGTTGGATCC GATACTCTGT TAAACAGTTT ATTACCGACA GAGGGAACTG TTTTGCACTG
CTTAATGCTG AGGATTGCAG TGAAGAGCAC AAGCATAAAA TTGAGCTTGA AAAGCTAGCT
TGGCGCTGTC GTTTAACTGA TTTATATAAC CGAACCTATT TTACTAAAGA GCTTGAGAAA
GTTAGGAAAG GTTACCTGCT GCTCATCGAT CTGCGTGGTT TTAAGCGTTT TAATGACACT
TATGGTCATG AGAGTGGCGA TCTACTGCTT ATTGAGATAG CTAGAAGGCT ACGGCATTTC
GGTAAGGTTA ATCACACTGA GTTACTTGCC AGAGTCGGCA GTGATGAGTT TGCTATTATT
TTGCCTGAGA TGAATTTGGA GGATCTTGAA TACGCCACTT CAAGGTTATA TCGCCAGATC
ACTTTGCCAG TCTCGATTGG CCGTGAGCAG ATTGAACCCA AACCTGCACT TGCCATTGTA
GAAATTGCTG GCATTGAGGC TAAGTTTCTA CCGCTAGCTT GCGCTGATAT TGCGCTTCAA
TATGCGAAAA AGAAGCAGGG TGACGCGATA CAGGTATTTA ATAACTCGTT GCTGAATACC
TTTAAAGCGA ATGCGGAGAT TGAGCGAGAT TTACAAACAG CTCTGAGGGG AAGAGAGTTT
GAACTCTACT ATCAACCTCT AAAAGATCTG CAAAAAAGAG CCTACATTGG GGCTGAAGCG
CTTATTCGAT GGCACCATCC CAAAAAAGGA GTGCTGTATC CAGGTGCTTT TATTGATATA
GCCGAGCAAA CGGGGCATAT CAATGCTATC GGTGCTTGGG TGCTTGAGGC TGCTTGCAAG
CAGTTGAATC TATGGCAGCA TCATAATATT AACCTTTCGA TGCACGTCAA TGTTGCCGCT
AGGCAGTTTT TCAGTGGCAA CTTATATGAC CAAGTGTGGG CCTTGATCAC ACGTTATCGT
TTAAAGCCAG GCAGCTTAAT TTTGGAGATC ACCGAAACAG AGTTGATGGA AGATATTAAA
TATGCGACCA ATCTATGTAA AGAGCTCACA GAGCTTGGCG TAGGTTTAGC CATTGATGAT
TTTGGTACGG GTTACAGTTC GATGCGTTAC CTTAAGCAGT TTCCAATCAG TAAACTTAAG
ATTGACCGCT CCTTTATCTC TGACCTATCA GTTAGCCATG AAAGTCAGGA AATTGTTAGT
GCTATTATTG CCATGGCATC TGCGCTAAAT ATTTCATTAA CAGCTGAGGG GGTAGAGACT
AAGGAGCAGG AGCTTTTCTT AGCAGATCAT CATTGTCATC AAGCCCAAGG GTTCCTCTAT
AGTCCAGCGC TTAGAGAATC TGAATTTAGC CAATTCTTAG AGAAAGATAG TTTTTTAAAT
AGCTGTTAA
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| Protein sequence | MTKRKYQHLL ELIVNSEAKQ MGDFHSTAKL AAELLCQQLL VTHVGVAIIS CENNTILPVA
NYGHISPAEF LRPAPDLCPK YIAELRTKRL IDAFDTRNDS RLCELSSNYF TSNGVRSTLD
IAIRINGHLE GVLFLERMAF SHWSDSEIQI ASQVADQLAL TLATRDAYDK EEKLTLLLNA
AEHSDQVTML INLKTEVVEY VNQAHETITG KPKSSVIGSS LQELSFVSQH PDETRVALTQ
VKLGSVVKGE NKIVKQDGSQ SWIRYSVKQF ITDRGNCFAL LNAEDCSEEH KHKIELEKLA
WRCRLTDLYN RTYFTKELEK VRKGYLLLID LRGFKRFNDT YGHESGDLLL IEIARRLRHF
GKVNHTELLA RVGSDEFAII LPEMNLEDLE YATSRLYRQI TLPVSIGREQ IEPKPALAIV
EIAGIEAKFL PLACADIALQ YAKKKQGDAI QVFNNSLLNT FKANAEIERD LQTALRGREF
ELYYQPLKDL QKRAYIGAEA LIRWHHPKKG VLYPGAFIDI AEQTGHINAI GAWVLEAACK
QLNLWQHHNI NLSMHVNVAA RQFFSGNLYD QVWALITRYR LKPGSLILEI TETELMEDIK
YATNLCKELT ELGVGLAIDD FGTGYSSMRY LKQFPISKLK IDRSFISDLS VSHESQEIVS
AIIAMASALN ISLTAEGVET KEQELFLADH HCHQAQGFLY SPALRESEFS QFLEKDSFLN
SC
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