| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2544 |
|---|
| Symbol | |
|---|
| ID | 6116828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3111666 |
|---|
| End bp | 3113504 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634061 |
|---|
| Product | peptidyl-dipeptidase A |
|---|
| Protein accession | YP_001760916 |
|---|
| Protein GI | 170726890 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.174016 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTT CCACTGCAAG ACTTTCAAAG ATCTCGCTGC TGGTCGGCTT AACATTAGCC
GCCACAGCTT GTCAAAAAGT GCAGTCTGAC GAAACAGTAT CAGCACAAAC CAGCGTTGCA
GAAGCCGAGC AATTTATAAC ACAATCCGAA CAAGCCTTGA GCGAACTCTC TATCGAAGTT
AATCGTTCAG AGTGGATCTA CAGCAACTTT ATTACGGAAG ATACCGCTGC CTTATCAGCT
TCAGTTGGAG AGAAATACAC CGCGACGACT GTGAAGCTTG CCACAGTTGC TGCAAACTAC
ACTCAACTTC CTCTCAGTGC CGATAATTTA CGTAAGCTCA ACATTCTACG CAGCGCACTA
GTCCTGCCAG CACCTTTAGA TCCAAAGAAA AATGCTGAAC TTGCCAGCAT CAGTTCAGAA
CTCAATGGAC TCTATGGTAA AGGAAAGTAC TGTTTTGACG ATGGTCGCTG CCTAACACAA
CCTGAACTGT CAGCCATTAT GGGAGAATCC CAAGACCCTG CACTTTTATT AGAGGTGTGG
AAAGGATGGC GTGATATAGC CAAACCTATG CGTCCTCTGT TTAAGAGAGA AGTTGAACTT
GCCAATGAAG GAGCACGGGA TCTAGGCTAT GCCGATCTTT CAGAGCTATG GCGTAGCCAA
TACGATATGG AGCCTGATGA GTTCTCTAAT GAACTGGACA GACTCTGGGG ACAAGTGAAA
CCACTGTACG ATTCACTTCA CTGTTATGTC AGAGGTGAGC TAAATGAGAA GTACGGTGAT
GATGTAGTAT CAAAACAGGG ACCTATTCCT GCTCATCTAC TGGGCAATAT GTGGGCCCAA
AGTTGGGGCA ATATCTACAA CCAAGTTGCA CCAGAAGATG CAGATCCCGG TTATGATGTC
ACCGAGCTGC TTGCACAGCA TGGTTATGAT GAGATCAAGA TGGTGAAACA AGCTGAAAGC
TTTTTCAGCT CACTGGGTTT TGAGCCACTT CCAGATACCT TCTGGGAACG CTCTTTATTT
GTCCAACCTA AAGACAGAGA TGTTGTGTGT CATGCATCAG CCTGGGCTCT GGACGACAAA
GATGATATCC GCATCAAGAT GTGTATCCAG AAAACGGCAG AGGACTTCAC TGTTATTCAT
CATGAGCTAG GGCATAACTA TTATCAAAGA GCCTATAAGA ACCAGCCATT TATTTTCAAA
AACAGCGCAA ATGATGGTTT CCATGAAGCC ATAGGTGACA CTGTTGCCCT CTCTATCACA
CCCAATTACT TAAAACAGAT TGGTCTGTTG GATGAGGTGC CTGATGCCTC TAAAGACATT
GGTCTGTTAC TCAAACAAGC ACTCGACAAG GTCGCCTTCA TGCCATTTGG CTTAATGATA
GATCAATGGC GATGGAAAGT GTTTAGTGGT GAAATAACTC CAGAGCAATA CAACCAGGCT
TGGTGGGAGT TAAGGGAGAA GTATCAAGGG GTGAAGTCAC CAATCAGTCG TGATGAAAAA
GATTTTGATC CTGGAGCTAA ATACCATGTA CCAGGAAATG TCCCCTATAC ACGCTACTTC
TTAGCTCATA TCTTACAGTT CCAGTTCCAC AAAGCTTTGT GTGACATCGC TGGCGATAAG
GGCCCTGTAC ACCGTTGTAG TATCTACGGC AATAAAGACG CGGGCACTAA GCTAAATACC
ATGCTTGAGA TGGGACAAAG TCAACCTTGG CCAGAAGCCT TAGCCGTTGT GACAGGCAGT
AAAGAGATGG ACGCCAATGC AGTACTTGAT TACTTTGCAC CATTACAAAC TTGGTTAAAT
GAGCAAAATA GCCAAGCCAA TAGACAATGT GGTTGGTAA
|
|---|
| Protein sequence | MKLSTARLSK ISLLVGLTLA ATACQKVQSD ETVSAQTSVA EAEQFITQSE QALSELSIEV
NRSEWIYSNF ITEDTAALSA SVGEKYTATT VKLATVAANY TQLPLSADNL RKLNILRSAL
VLPAPLDPKK NAELASISSE LNGLYGKGKY CFDDGRCLTQ PELSAIMGES QDPALLLEVW
KGWRDIAKPM RPLFKREVEL ANEGARDLGY ADLSELWRSQ YDMEPDEFSN ELDRLWGQVK
PLYDSLHCYV RGELNEKYGD DVVSKQGPIP AHLLGNMWAQ SWGNIYNQVA PEDADPGYDV
TELLAQHGYD EIKMVKQAES FFSSLGFEPL PDTFWERSLF VQPKDRDVVC HASAWALDDK
DDIRIKMCIQ KTAEDFTVIH HELGHNYYQR AYKNQPFIFK NSANDGFHEA IGDTVALSIT
PNYLKQIGLL DEVPDASKDI GLLLKQALDK VAFMPFGLMI DQWRWKVFSG EITPEQYNQA
WWELREKYQG VKSPISRDEK DFDPGAKYHV PGNVPYTRYF LAHILQFQFH KALCDIAGDK
GPVHRCSIYG NKDAGTKLNT MLEMGQSQPW PEALAVVTGS KEMDANAVLD YFAPLQTWLN
EQNSQANRQC GW
|
|---|
| |