Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2526 |
Symbol | |
ID | 6116810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3087286 |
End bp | 3089052 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641634043 |
Product | type VI secretion protein |
Protein accession | YP_001760898 |
Protein GI | 170726872 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTCAAG ACAAATATTT CAGGGATGAA TTGTCTTTCC TCAGAGAGCA GGGGAAGCAG TTCTCAGATC TTCATCCACA ATTGGCTCGC TACCTACATG GCAACAATAC CGATCCAGAT GTGGAGCGTT TGTTAGAGGG GTTTGCTTTT CTAACCGGTA GATTACGTGA AAAAATTGAC GATGAGTTCC CTGAGTTAAC TCACTCAATG ATCAATATGT TGTGGCCTAA CTATCTTAGG CCAGTACCTA GTACCAGTAT TGTGCGCTTC TCTCCTATAG AACGTGGTAT TAGTCATAAG CAGACAATTG AGAAGGGCTG CATGTTAGAT GCAACCCCTG TCGATGGTGA AGTGTGTCAT TTCACAACCT GCAGAGAGGT TAATGTCTAT CCCTTAGTGG TGGATCACAT CGGCTCATTT CACTCTAGAG AAGCCTCTAT TGTTGATATT CACCTGAACA ACTTAAGCGA TCTTTCACTC AATGATATTG GGCTTGATGA TCTAAGGTTT TACTTAGGTG GACAAGATTA CAGTGCGCAG ATGCTTTACC TCTGGCTCAA TCACTATCTT GAAGGGATTG AGATCCATGT CGGTGAGCGG CATTACTCGC TGCCTAAATC CAGTTTTAAA TGTGTGGGGT TTGCCAGTGG TGATGGCATT TTACCTTACC CTCAAAATGT CTATGAAGGG TATCGTATTT TACAGGAGTA TCTCTCATTT TCTGATGCAT TTATGTTCTT TGATATCTGT AATATTTATA AATGCTTACC CAGTGATTTA ACCGGTAACT TCTCCATTAA GTTAATGTTT TCTCGCACAT TACCAGCAGA TGTATTGATT AAGGATGAGT CTTTTCAGCT CTATTGTGTT CCTGTACTCA ACCTTTTTTC ACATGATGCA GATCCGATCG ATCTTACTGG TAAAAAAATA GAGTATCCCA TTGCACCATC GAGTCGAAAA CCATCACATT TTGAGATATT TAGTGTCGAT AAAGTGCAAG GTTGGGTCGA TTCAGACGCT GGACGTTTTC GTGGTGAAGA GCGTGTCTAT ACCCCCTTTG AAAGCTTCCA GCATGAGATT GAGCGGGCTC GTGAGCGTGT GGCACTTTAT TACCGTTTAA GAGTAAAAGA GAGTATTCGT GAAGATGGCT TCGACCACTT TATCTCTTTT GTCAGAGGCG ATGAGACTCA AAGCTTTGAT GTCAGTGAAG CGGTGTCGAT TAGTTTAACT TGCACGAATC GTCAGCTACC GACCAAATTA GGCAAAGGTG ATATCTGCGT TGCTACCGAC AGCTCACCTA ATTTTGCCAC CTTTAAGAAT ATTACAGAAC CAAATGCATC CCTTCGTCCT GTTCTCGATG GCAGCATGCT ATGGACCTTA ATCTCTAATT TGTCATTGAA CTACCTTTCA TTGCTATCTA AAGATGCCTT GTGCTCGATT ATTCGAGCCT ATGATTTTAA ATCTTTGATT GACAGACAAG CTGAGCGGAT CACGCAGAAA AGGCTTGATG GGATAGTGAG TATTGAGTCA AAGCCGACAG AGCGAATATT ACGTGGTATG CCAGTGCGCG GCTTGATGTC CGAAATCGTG CTTGATCAAA AGTACTTTGG TTCTGAAGGC GATCTATATC TATTTGCCAC TGTACTTAGC CGATTTTTTG CACTCTACGC CAGCATCAAC TCATTTCACC AGTTAGTAGT GATTAATGCA GCTAATCAAG AAAGGTACAC ATGGGATATT CAGATAGGTC AACAGCCACT GATTTAA
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Protein sequence | MSQDKYFRDE LSFLREQGKQ FSDLHPQLAR YLHGNNTDPD VERLLEGFAF LTGRLREKID DEFPELTHSM INMLWPNYLR PVPSTSIVRF SPIERGISHK QTIEKGCMLD ATPVDGEVCH FTTCREVNVY PLVVDHIGSF HSREASIVDI HLNNLSDLSL NDIGLDDLRF YLGGQDYSAQ MLYLWLNHYL EGIEIHVGER HYSLPKSSFK CVGFASGDGI LPYPQNVYEG YRILQEYLSF SDAFMFFDIC NIYKCLPSDL TGNFSIKLMF SRTLPADVLI KDESFQLYCV PVLNLFSHDA DPIDLTGKKI EYPIAPSSRK PSHFEIFSVD KVQGWVDSDA GRFRGEERVY TPFESFQHEI ERARERVALY YRLRVKESIR EDGFDHFISF VRGDETQSFD VSEAVSISLT CTNRQLPTKL GKGDICVATD SSPNFATFKN ITEPNASLRP VLDGSMLWTL ISNLSLNYLS LLSKDALCSI IRAYDFKSLI DRQAERITQK RLDGIVSIES KPTERILRGM PVRGLMSEIV LDQKYFGSEG DLYLFATVLS RFFALYASIN SFHQLVVINA ANQERYTWDI QIGQQPLI
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