| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2525 |
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| Symbol | |
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| ID | 6116809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3086315 |
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| End bp | 3087322 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634042 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001760897 |
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| Protein GI | 170726871 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGATATT CAGATAGGTC AACAGCCACT GATTTAATCG ATGGCGGTGA TGAGCTAATT
ATTCCTGATG AGATTAGCTC CTATAATTTT TTTCAATTAG TTGAATTGAT TCATAAATTA
GATGGCAATA ATCCTGAGGG ACAGGAGTGG GAAAGCCTAG GGAATATGTT TTTCTCTGCT
AATCCCAGTT TAGGTTTTCC AGCAAGTGAT GTAACAAGAA TTGAGCGTCA TCCAAAGGAG
AGGGTGCAGA TTGAAACGAC TTTTCTTGGC TTAAATGGTG CGCAATCACC ACTGCCCAGC
TACATGCTGG AGGAGTTGCT TCATGACGAT AGCAATATAA AACGAGATTT TTTAGATTTT
TTTAATAACA GATTAATCGC CCTGTTTTAC AGAGCTTGGC GTAAATATCG TTATTACATA
CGTTTTCAAG ATAACGCCGT CGATAACTTC TCATCACAAG TGTTTGCGCT TGTGGGCTTG
GCAAATGAAG ACGTACGAGG TGAGACACCA ATTAACTGGT GCAAGATGTT GGCCTATGCA
GGCATGTTGG CTGGCAGAAG TCGTTCACCA CAGGCTGTAG CTGGTATCGT TGCTCACTGT
TTCGATCTGG AAAATGTATC AATTAGAGAG TGGGAGTTTA GGCATGTTGA GATCCCTGAG
CCTCAAAGGT GCCAATTAGG AAAATTTAAC TCTCAGTTGG GAGTCGATAC GGTATTAGGC
GAAAAGGTCG GTGATATCAC TGGGAAATTT GTGCTCTGTA TTAAAGATTT ATCGCTTCAC
CGATTTCAGG ATTTTCTTCC TTCAGGAAAG GAGTTTATGC CCCTGTGTAA AGTGATGGAA
GTGATCCTTC GAGAGCAGAT GGCGTTTGAT TTTGAATTGA CGCTAAAAAC GGATGAGGTT
CCCTTGCTTA GGTTAGGGGA GGAGAAAGGC GGTCAGTTAG GTTGGTCTTC CTTTTTGGGG
CAAGCTGAGA TTGAAAAGCA GCATGTGTTA ATACAAATAA GGCAGTAA
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| Protein sequence | MGYSDRSTAT DLIDGGDELI IPDEISSYNF FQLVELIHKL DGNNPEGQEW ESLGNMFFSA
NPSLGFPASD VTRIERHPKE RVQIETTFLG LNGAQSPLPS YMLEELLHDD SNIKRDFLDF
FNNRLIALFY RAWRKYRYYI RFQDNAVDNF SSQVFALVGL ANEDVRGETP INWCKMLAYA
GMLAGRSRSP QAVAGIVAHC FDLENVSIRE WEFRHVEIPE PQRCQLGKFN SQLGVDTVLG
EKVGDITGKF VLCIKDLSLH RFQDFLPSGK EFMPLCKVME VILREQMAFD FELTLKTDEV
PLLRLGEEKG GQLGWSSFLG QAEIEKQHVL IQIRQ
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