| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2522 |
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| Symbol | |
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| ID | 6116806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3083105 |
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| End bp | 3084439 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634039 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001760894 |
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| Protein GI | 170726868 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.711445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTCAA GAAATAGAGT AATTTGGGCT GAAGGTTTAT TCATCAAGCC ACAACATTTT
CAGCAGCAGC AACGTTATTT TGAGTATGTC ACCGATGAGC GTATGACCTC GGTCAACAGC
TACCTCTACG GTATATCACA GCTCGAGCTA AACCCTGAGT ACCTCGGGTT TGGTCGTATT
GCGATTCAAC GAGCTAAAGG CGTGATGCCA GATGGAACAG TATTTAATAT TCCCCAAGAG
GACGTTCTGC CTAGTGCACT GGAAGTTGTT GATGGCTCAT TGGCCAACCA GATAGTGTAT
CTGGCACTGT CACTACGCAG TGATTCGATA ACTGAAGTGA CGGAGAGTAC CTCATCGGGT
AATACCCGCT TTGTGACTCA TCGCCATGAG GTGCGAGACA TTCATAGTGA GCAGGGGGAT
TTTTCTACCA TAGATGTCAG CCCTGTACAG ATGAAGCTGA TGTTTGAAAA AGAGGATCGC
AGTGCCTACT CCTCAGTGGC GATAGCTAAA ATCTTAGAAA AACGTCCAGA TGGTAGTGTG
GTTCTGGATC CTAACTTTAT TCCTTGTCAT TACAATGTGC TGGGTGTGCC GTTTCTGCAT
CGATTCATTG GTGAGATGGC AGGGATGATG AGAGAAAGAG CTAAAAATAT AGCGGTTAGA
ATAGGCTCGC CAAGTCAAGG TGGCGTCGCT GATGTGTCAG ATTTTATGCT GTTACAAGCA
TTAAATCGCA TGCAACCTGT ACTGCAACAC CTCTCACAAC TGAAAAGCCT GCATCCAGAG
CAACTGTATC AGACATTGGT GAGCATTTGT GGAGAGCTAT TCTCCTTTAC CGATGACAGT
CGAATTGCGC CAATATTTAA ACCTTACGAT CATGATATGC CGATCACCTC CTTTGGCCAA
TTGATGAATA TGCTACGTCA GTCATTAAGT ATCGTCCTTG AGCCTAAAGC CGTGTCCTTA
CAGTTACAGA AACGTAAGTA CGGATTGATG GTTGCGCCAG TACAAGATCC TGATTTGATC
AAAGAGGCTG ATTTCATCTT AGCTGTTCGC GCTAAGTTGC CTTTAGAGGA GCTGAAAAAG
CTCTTTATTC AACAAACTAA GATCGCTTCC GTTGAGAAGA TCCGCGAGTT GATCTCGTTG
CAACTTCCTG GTGTCGGTTT AACTCCGCTA CCCGTGGCGC CAAGACAGTT GCCATATCAC
GCAGGTTACA CCTATTTCCA ACTTGATAGG ACAAGCCCAT CTTGGGAGAT GTTACAACAC
TCAACTGGAT TTGCCTTCCA TGTTGCTGGT GAGTTTCCTG AGCTCGAGTT GCAGTTCTGG
GCGATAAGGA GCTAG
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| Protein sequence | MSSRNRVIWA EGLFIKPQHF QQQQRYFEYV TDERMTSVNS YLYGISQLEL NPEYLGFGRI
AIQRAKGVMP DGTVFNIPQE DVLPSALEVV DGSLANQIVY LALSLRSDSI TEVTESTSSG
NTRFVTHRHE VRDIHSEQGD FSTIDVSPVQ MKLMFEKEDR SAYSSVAIAK ILEKRPDGSV
VLDPNFIPCH YNVLGVPFLH RFIGEMAGMM RERAKNIAVR IGSPSQGGVA DVSDFMLLQA
LNRMQPVLQH LSQLKSLHPE QLYQTLVSIC GELFSFTDDS RIAPIFKPYD HDMPITSFGQ
LMNMLRQSLS IVLEPKAVSL QLQKRKYGLM VAPVQDPDLI KEADFILAVR AKLPLEELKK
LFIQQTKIAS VEKIRELISL QLPGVGLTPL PVAPRQLPYH AGYTYFQLDR TSPSWEMLQH
STGFAFHVAG EFPELELQFW AIRS
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