| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2518 |
|---|
| Symbol | |
|---|
| ID | 6116802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3077522 |
|---|
| End bp | 3078163 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641634035 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001760890 |
|---|
| Protein GI | 170726864 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03360] type VI secretion-associated protein, VC_A0118 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.356894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAGG GTAATGGATG GATCCTGTTT GGATTGCTAA TGACAGCAGC AAGTTGTTAT
GCAGCGCCCC AGCAATTGAG CGATCCGAAA GCTTGTGTGC AGATTAAAAG TAAGTTGGAG
CGACTTTACT GCTTTGACCA AGCTTTTATG ACGCCTATCA CTGTTGATGA TACTCAAGGT
AGCGAGCAAG CCCGCGTTGT TGAGTGGGTT AGGGCGGAGG CTAGTGAAGC TAATCGACAA
GACGAAACGC ACTTTTTATT AGGGCAACAA GAGGATAATC CTAACAATGT GTGGCTGACA
GCAACGGCCA TAGGGGCACT TCCTCCAAGG CCTATTCTTA TGCTGAGTTG CATTGATGAG
ATCAGCCGTG TTGAGCTGGT GGTATCTGAA GAGATCGCGC AAGGATCGAT ATATGTGGCG
GTGAACAAGC CAAGCTCTCA AGGTGAGTTA TGGGTCAGTG ATAACTCGGG TTTAGTGTTT
AGATCGGGAC GCGGTATTCC AGCTATTCAC CTGATGAAGA AGATGCTTTT AGCTCAAGAG
TTCACGCTCA GCTCTGATAA TGCGAACTTC AATGACTTGC AGTTTGACGC AACGGGTTTA
AAGCAAGCCA TTAAGCCGCT ACAGAAAGCA TGCCGCTGGT AA
|
|---|
| Protein sequence | MSQGNGWILF GLLMTAASCY AAPQQLSDPK ACVQIKSKLE RLYCFDQAFM TPITVDDTQG
SEQARVVEWV RAEASEANRQ DETHFLLGQQ EDNPNNVWLT ATAIGALPPR PILMLSCIDE
ISRVELVVSE EIAQGSIYVA VNKPSSQGEL WVSDNSGLVF RSGRGIPAIH LMKKMLLAQE
FTLSSDNANF NDLQFDATGL KQAIKPLQKA CRW
|
|---|
| |