| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2517 |
|---|
| Symbol | |
|---|
| ID | 6116801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3076114 |
|---|
| End bp | 3077517 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641634034 |
|---|
| Product | type VI secretion-associated protein |
|---|
| Protein accession | YP_001760889 |
|---|
| Protein GI | 170726863 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.29627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACATC AATATATTGA AAAGATAGCG AAACCCATTG CTGGAGATAA TCCTGTCGGT
GAAAGACTTT TTGACGATGT TTTGTTTGAT TTTGTCGAAG GTCAATTGAT GAAGGTTGGA
TCTCTTTCTC ATGCAGAGGT TCAGTGGGGA GAGGTGGAAA CCGCTGTGGT CTCATTATTG
GAGACTCGCA CTAAAGATCT AAAGCTCATC ATCTATTTGA TGCAATGCCT TCAATACCAA
GCCAGCCTTG AGCGATTTAG TTTATCCCTT GGTGTTTTAG ATATCTTCAT GAAGGAGTAT
TGGCTGACTT GCTACCCTGC ACCAGGGGAT AGGGGCGTAC TACCTAGGCG CAAATATTTC
TCTCAGATTG TTCAGCGAAC GGTAAAGTCT GGGGAAAGTA TCGATACACA ATTTTGTGAG
CCACAAAGTA AAGAGTTGCT GCTTAAGCGC TTGTCCAGCT TACTCGACTC GGCTGAGAAG
TTGGAGCTGC CTACGGAGGT GCTCTCCTCA TTAGCAACAA GACTAACCAG ACAGTTAGAG
CAAAATGAAA ACAGAGTATC GGCAACCAAG TCGAACGCGG TCAGTGAACC TGCTGAGGAG
GCGGTAAGCA GAAGTGCGCC TAAGTTAGAG ATAGACTCGA GCAATGATAA AGCGACCAAA
CAAACCTTGC TTAAAGTGGC TGATTTTATC TCTGAGTTTG AAACTGGGAC AGGACTAAGC
TTGCGGATCC GTCGATTTGC TACTTGGTCA TCAGTGAGCG GTGTGCCAGA AAATGCCAAT
GCTGCTGGTG AAACCAGTTT GATGCCGATT GCAGCCGATA GGGTCAGTGA GTATCAAAGT
CAGCTAGAGA AAGGGGCGGA TATGGCGCTG CTTAGGCGCG TTGAGTTGAG CCTGACGTTA
AGCCCTTTTT GGTTAGATGG ACACCACTTA AGTGCCCAAA TTGCCATGGC GCTTGGGCAG
CTAGAGTGGG CTAAGGCGAT ACATGAAGAC ACTGCGGCCT TTGTTGAACG TCTGCCTAAG
CTACTCATGA TGTCATTTAA AGGCGGCATT CCTTTTGCCA ATGCCGAGAC TCGAACTTGG
TTAGATGAAG GTTACGGACG CAACAGTTTT GAAGGGAACG GGCAGGGAGT TGAGCAAAAA
AGGGCTGAGG TGGTTGAGCT GGCAGATTCG GGTGGCTTAT CGGTCGCTTT TGCCAGTTTG
AATGAACATC TACAGCAAGC ATCAGAGCCT AGAGATGCAT TTTATCTACG TCTGCTGGGT
GCAGATCTAA AACAGAGTCA TCAATTGTCA GCGATGGCAA CGGTGGATTA TCAAGTCTTG
TATCAACAAG CAAGTCATAT GGTCTTAGCT GATTGGGAGC CAACCTTGAT GGCTCGATTA
AAACAAAAAG CAAATTTGGA TTAA
|
|---|
| Protein sequence | MTHQYIEKIA KPIAGDNPVG ERLFDDVLFD FVEGQLMKVG SLSHAEVQWG EVETAVVSLL
ETRTKDLKLI IYLMQCLQYQ ASLERFSLSL GVLDIFMKEY WLTCYPAPGD RGVLPRRKYF
SQIVQRTVKS GESIDTQFCE PQSKELLLKR LSSLLDSAEK LELPTEVLSS LATRLTRQLE
QNENRVSATK SNAVSEPAEE AVSRSAPKLE IDSSNDKATK QTLLKVADFI SEFETGTGLS
LRIRRFATWS SVSGVPENAN AAGETSLMPI AADRVSEYQS QLEKGADMAL LRRVELSLTL
SPFWLDGHHL SAQIAMALGQ LEWAKAIHED TAAFVERLPK LLMMSFKGGI PFANAETRTW
LDEGYGRNSF EGNGQGVEQK RAEVVELADS GGLSVAFASL NEHLQQASEP RDAFYLRLLG
ADLKQSHQLS AMATVDYQVL YQQASHMVLA DWEPTLMARL KQKANLD
|
|---|
| |