| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2516 |
|---|
| Symbol | |
|---|
| ID | 6116800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3072533 |
|---|
| End bp | 3076096 |
|---|
| Gene Length | 3564 bp |
|---|
| Protein Length | 1187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641634033 |
|---|
| Product | type VI secretion protein IcmF |
|---|
| Protein accession | YP_001760888 |
|---|
| Protein GI | 170726862 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTCTA AGCTCAAATC TTTCTTTATT AAGCTATTAC CGGAACTCAA ATCGGCTTTG
CCTATTTTGT TAGTTGCCAT TTTTGTTTTG ATCAATGTGG GGATCTGGTG GGCAGGCCCT
TGGCTTGTGA TTGATGAAAG TAAGCCTCTG TCGAGTGTTA ACTCAAGACT GATCGCTACT
GTTATCTTCT CCTTGTCCTG TTTTACCATT TGGGGTTGGT TCCAATGGCG AAAGCTAAAG
CAATACAATG TCGATAATGA GAAGTCACAG CAGTTAAAAG ACGATCCCAT CATTGGCATG
GTAGAGCGTC AGGAGGTTGA ACTTAATGAT GTGATGTTGG GGCTTAAGGA GAGCCTTAAC
ACACGAAACT ATCTCTATGC GCTTCCTTGG TATCTAGTAC TAGGGGTAGA AAATGCGGGT
AAAACCAGTT TGATTAACCG TTCTGGTCAA AAGTTTGTCT TCTCCTCTGT GATGAGGGCA
TCGGGTAAGA AAACCGAGAA TCCTTACTCA TTTGATTGGT GGATCAGTGA TGATGCGGTA
TTGATCGATC CCGATGGAGA GCTATTGACC CAAAGAACGG AAGAGGGAAG CAACAACGGT
GAGATGAGCA AGCGGCTTTG GATGCATTTT GTCGAGTGGC TAGATAAAAC ACGTAGCCGT
CGTCCATTAA ATGGGGTTGT TCTGGCACTA GATATGGCAA ATATGGTGAG TGCGCCGACA
TCTGATCGTA AAGCTTATGC CCACCTAATG CGTGCGCGTT TACGTGAGTT GATGGAAACC
CTATCGACTC GTCTTCCTGT CTATATCACC TTGACTAAGC TTGATCTTTT GTTGGGATTT
GAACCATTTT TCCGTCACTA CAATCAGGCT GAGCGTGATG AGATCATGGG ATTCACCTTT
TCACTAAACT CAGTCAATGA TCTTGATAGT TGGCTTGAAG AGTTCAATGA AGATTATACC
GACTTTATCA GCCGTATTAA TGCCCATCTT CCACGCGCGC TACTTCAATG TCGTGATAAA
GAGGAGCGGG CAGCCATCTA CAGTTTTGTT AGGCAAGTCG CTGGTGCTCA TCAAGTTCTT
CAGGAGTTTT TTGCAGATGC ACTGGCAAGC GATCAGTTCT CGACCTCTGC ACTGGTGCGA
GGCGTCTATT TTACCTCTGT GTATCAGCAA GGGGTGCCGA CTAATGCTTA TGTCGATAGT
GCTTCTCGTC GCTATGGACT TAGAGAATCG ATAAATAGTG CACAAAAAAG CGATAATTCA
ACGCCATATT TTATTCATAC TCTGTTTCAG AAGATCATCT ACCCTGAGGC AGGTTTAGCC
TCTGATAATT TTAAAGTCGC AAAGCAGAAA AGGCGGCTTA TGTTGCTCTC CTTTGTTGCT
TGCTCTATCG CTTCTGTACT GCTGGTGGGC ACTTGGCATC GCTACTACTT ACAAAACAGC
CAGCAAGCCG ATGCTGTACT GGATAAGGTG ACTGAGTTTA ATGAGCTCAA CGATCAAACA
AGCTTTGATC AACTCGGTAA GAGTATTATT CCGCCGTTAA ATACCATACG TACGGCTACG
TTAGAGTTTG GTTTTTTCCG TGAAAAACCT AAGTTAATCT CTGACTTTGG GCTGTATCAG
GGCCATACCA TAGGTCCAAA AGTTGAAGAG ACCTATTTAA AGCTGCTCTC TTACCGTTAT
TTGCCTGCAC TGCTAAAGCA GGTGGCAACA GATATGTCTG ATGCACCGAC CAATAGCAAT
GAGAAGCTGG CTATGCTCAG AGTGTTTCGA ATGATGGTGG ACAAAAGCGG ACGTCATGAT
GATTTTGTGA AAGCCTATTT CACCCAAGCA TGGCAAACAT CCTATGAAGG TGACAGGGTT
TTGCAAACTC AGTTGATGGA GCACCTTGAG TACGCACTGC AACATACCGA CCTTCAAGCG
ATGCGAGACG ATGGGGCTGT GGAAGCGGAA AATAAGTTAC GACCCTATGA CCGCTTGATA
GCAAAAACTC AAAGAGAATT AAGCAGTCTA CCCATAGAGC AGCGGGTTTA TCGCCAGCTT
AAGCAATCAG CCTCTTCACA ACTGGGTAGT GCACTCGACC TTAAGGTTGC AACAGGTCCC
GCTTACGAGT TGGTGTTTGA GCAAAGAGTG AGTGATGAAA ATGCGCCAAA TGCGATGAAG
ATCCCTCGTT TATTGAGTAA ACAAGGTTTC GAGCGTTACT TTATCCCGCA GTCTGATTCC
ATTGCCGATC TGGCCTTGAT TGATAGCTGG GTACTTGGTC AATCTGAGTC AACGGATTTT
AGTGATGCAG ATAAGATAAG TTTGCGTAAT AAGATCATTA ACCAATACAC GTTAGATTAT
CAGTCATCTT GGCGAAAGGC GCTAAACGAC TTTGAATTAA AGGATTTTAC AGACATTAAT
CACGGGGTAT TAGTGATTGA TAATTTTGCC ATTAGCAATC GTCCTGTGAA TCGCATTTTA
GACAATTTGA CCAGAAATAC TGAGCTATTC CCATCGATGC CAGATGATGC CAGTGCTATG
GCGGAGATTA TTGAGACGCC TCAATATCAG ATAGCGGCCA AGATTGATGG TGATTTTACA
GATTTAAACC AACTGACTAA GACTGATGGA ACTCAACCTG TCTATTTGGA TGAGGTGATG
GAGTCTGTCG TGCGTTTACA TGCTTATCTT AAGTCTATTC AAGATGCCCC CGATGTTGGT
AAAGCGGCGC TTAAAGCGGC TCAGGAGCGT CTGACACTTA ATGATGCCGA TCCTATTTAT
GCGCTGGAAA GGATCTCAAC CAGTTTGCCA AAACCTATGG ATACCATGGT TGGCAAACTA
GCAAGTGAAA GCTGGAAAGT GGTACTACAA AGTGCCATTA AGCACTTAGA GGTGCGTTGG
TATAACGAGG TGTATCAGGA TTATCAACAA AACCTAGCTT CGCGTTATCC GTTTAATCCC
GCATCGACAA AGCAGGTATC TATCGATGAC TTTCAAAGCT TTTTTGGTCC CGAAGGCACG
TTAAGTCGTT TTTATAACGA TCAGATGAAG ATGTTTCTTG AAGAGAACTT TGATGCACTA
AACCAATTTA GTAAAGGAGA TTCCAATCTA GTACGCCGCG AGGTACTTCA ATCGCTTAAG
CAGGCACAAC AGATCCAGAA AGCCTTCTTT AATCCGAAAG GAAACTTGGA TGTGGAGTTC
TCGTTAGAGG CGCTGCAGAT GAGTCCAAAT AAACGTCGAA GTGTGATGAA TATTGATGGT
CAGTATGTGG AGTACACTCA TGGCCCTAAA CGAGGTATCG ATCTGGTGTG GCCAAATACG
TTACGTGACT CTACAGTCAG TAAATTAACC TTGGTGCCAA GTGAGTCAAA TGCGTCACCA
CGCTCGATTG TGTTCGAAGG GCCTTGGGCA TTTTTCCGCT TATTAGATAG TGCAAGAATG
TCCGGTAGTA GTTCAACCAG TATCGATTAC CAGTTCGAAG TCGATAAAGG TGATGTCACC
TACCGCCTAC GTACGCGAGA TAATGTGAAT CCATTTACCA GCAAACTACT GAGTAGTTTT
GAGATCCCAA AAACCTTGTA TTAA
|
|---|
| Protein sequence | MWSKLKSFFI KLLPELKSAL PILLVAIFVL INVGIWWAGP WLVIDESKPL SSVNSRLIAT
VIFSLSCFTI WGWFQWRKLK QYNVDNEKSQ QLKDDPIIGM VERQEVELND VMLGLKESLN
TRNYLYALPW YLVLGVENAG KTSLINRSGQ KFVFSSVMRA SGKKTENPYS FDWWISDDAV
LIDPDGELLT QRTEEGSNNG EMSKRLWMHF VEWLDKTRSR RPLNGVVLAL DMANMVSAPT
SDRKAYAHLM RARLRELMET LSTRLPVYIT LTKLDLLLGF EPFFRHYNQA ERDEIMGFTF
SLNSVNDLDS WLEEFNEDYT DFISRINAHL PRALLQCRDK EERAAIYSFV RQVAGAHQVL
QEFFADALAS DQFSTSALVR GVYFTSVYQQ GVPTNAYVDS ASRRYGLRES INSAQKSDNS
TPYFIHTLFQ KIIYPEAGLA SDNFKVAKQK RRLMLLSFVA CSIASVLLVG TWHRYYLQNS
QQADAVLDKV TEFNELNDQT SFDQLGKSII PPLNTIRTAT LEFGFFREKP KLISDFGLYQ
GHTIGPKVEE TYLKLLSYRY LPALLKQVAT DMSDAPTNSN EKLAMLRVFR MMVDKSGRHD
DFVKAYFTQA WQTSYEGDRV LQTQLMEHLE YALQHTDLQA MRDDGAVEAE NKLRPYDRLI
AKTQRELSSL PIEQRVYRQL KQSASSQLGS ALDLKVATGP AYELVFEQRV SDENAPNAMK
IPRLLSKQGF ERYFIPQSDS IADLALIDSW VLGQSESTDF SDADKISLRN KIINQYTLDY
QSSWRKALND FELKDFTDIN HGVLVIDNFA ISNRPVNRIL DNLTRNTELF PSMPDDASAM
AEIIETPQYQ IAAKIDGDFT DLNQLTKTDG TQPVYLDEVM ESVVRLHAYL KSIQDAPDVG
KAALKAAQER LTLNDADPIY ALERISTSLP KPMDTMVGKL ASESWKVVLQ SAIKHLEVRW
YNEVYQDYQQ NLASRYPFNP ASTKQVSIDD FQSFFGPEGT LSRFYNDQMK MFLEENFDAL
NQFSKGDSNL VRREVLQSLK QAQQIQKAFF NPKGNLDVEF SLEALQMSPN KRRSVMNIDG
QYVEYTHGPK RGIDLVWPNT LRDSTVSKLT LVPSESNASP RSIVFEGPWA FFRLLDSARM
SGSSSTSIDY QFEVDKGDVT YRLRTRDNVN PFTSKLLSSF EIPKTLY
|
|---|
| |