| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2513 |
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| Symbol | |
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| ID | 6116797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3068198 |
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| End bp | 3070246 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634030 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001760885 |
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| Protein GI | 170726859 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTTT TAGGCTCCGG ATTGCGGTTT CATTTTAAAG CGCAAAGCTT AGCTGATGAT
AGCTTTGACG TGCTTGATTT CAATTTTATT GAAAGCTTAT CGAGTCCTTT TGAAGTTAAG
CTCACTCTGC TGAGTCGGCT CGATAATCTG ACCCCTGAGG CGATTGTTGA TCAAACCGGT
TTAATGAGCT GGTCGCAAGG GGAGAGTGTT GAGCGACATG TTCATGGCAT CGTCAGTCAG
TTCAGTAAAG GTGACAGTGG TCATCATCAT ACTCAATACA ATGTCACTAT CGTTCCCGCT
TTATCACGCC TGAAATTAAG AAAGAATAGT CGAATATTCC AGCAGCAAAA TGTACTTGTC
ATCATCTCAA CCCTGCTAAA TGAGATGGGG ATAAGTGATT ACGCCTTTAG CTGTGATGCA
CGATTTGAAT CTGAAGTACG TGAGTATTGT GTTCAATACA GTGAAACGGA TTTCGAGTTT
ATCAGCCGTT TAGCTGCGGA AGTGGGGCTG TTTTACTATT TTGAGCATAC TCAAGATGTT
CACACACTTA TCTTCTGTGA CAGCACAAGT AAATTGAGTG GCTTAAAAAG CCCATTTCCC
TATAACGTGC TCAGTGGTGG AGTTGCCGAA AACACCTTTG TTAATCAATT TAGTTACCAA
CACCAAATTA AGCCCGCTAA TATCAGCTTA AAAGATTACA GCTTTAAGAA GCCTCAATAT
AGTTTTCTGC AAAGCAGTAA GGGCCAAGAG CTCAAGTTTC AAAAGCCTGA CTATGAGCAT
TTTGATTACC CTGGTCGCTA TAAAGATGAT GCTGCTGGGG TTCCTATTAC ACAAGTTCGT
CAAGAATATC TGCGCCGTGA TGCTCAAGTT GCCACAGGGC AGAGTAATAT TTTGCAGGCT
ATCCCAGGTT TTAAGTTCGA TCTCATTGAA CATAATGACC GAGCGCTTAA TCGTGACTGG
ATATTAACGT CGATTGAACA CACTGGTGAG CAGGGGGCGG CAGCTGAAGA GGCAAACACA
CAAAAGCCCA CACGTTACAG TAATCAATTT CATGCAATCC CAGGTAATAA CCCTTGGCAG
GCTGAGCCAA ACAGTAAGCC TTTGGTTACA GGTCCACAAA TTGCCATTGT GGTTGGCCCC
AAAAATGAAG AGATATTTTG TGATGAGTTT GGCCGAGTAA AAGTCCAGTT CCCATGGGAC
AGATATGGAG AGAGTAACGA GCACTCCAGC TGCTGGGTTC GAGTCAGTCA AGGTTGGGCT
GGGGGGCAAT ATGGCATGAT GGCTGTGCCA CGTATTGGTC ATGAAGTGAT TGTTAGCTTC
TTAGAGGGCG ATCCCGATCA GCCAATTATT ACAGGTAGAG CCTATCACAC CACCAATGTA
ACCCCCTATA TCTTGCCTAA TCATAAAACC CGAACCGTGA TTAAAACCCA GAGTCATAAA
GCCGAAGGGT TTAATGAACT GCGTTTTGAA GATGAGGCCA GTCGTGAGCA GATCTATGTT
CATGGACAGA AAGATATGGA TATGGTGATT AACAATATTC ATAGAGAGGA GATTGGCTAC
GATCAGCATC TGACTGTTGA ACATGACAAA TTTGAACTGG TTAAGCAGCA CCGCCATACA
ACAATAGGAC AAGATGAGAT AGCTCAAGTT GGGCGGGATC ATCAAGTCCT TGTTGGACGT
AACCTTATTC ACCGAGTGGT AGGTATGGTT AAGCGTTATA TTGGCGGGGG CATCATTACT
CAAATTGATG GTGCTAGCCA GACGAGTATT GCAGCCTCGG AAGAGAAGAT AATTGGCGCC
AATCAACAGA TCAAAGTCGA TAACGAGAGC TATCTTAAAG CAAGTAAAAT CGTCCTCGAA
GCTGGTGATG AACTCACTAT TAAAGGTCCC GGTGGCTTTA TTAAGATTGA TAGCGGTGGT
GTGACTATCT CTGGCAGTAA AGTGAAGATA AATGAGGGCG GATCCCCTGG AACAGGGACA
GCGCCTAAAG CGGTGAAACC AGAAGAGCCC GCTAAACCTT CAATCCCAGA AACTGCTGAT
AGGCGTTAA
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| Protein sequence | MALLGSGLRF HFKAQSLADD SFDVLDFNFI ESLSSPFEVK LTLLSRLDNL TPEAIVDQTG
LMSWSQGESV ERHVHGIVSQ FSKGDSGHHH TQYNVTIVPA LSRLKLRKNS RIFQQQNVLV
IISTLLNEMG ISDYAFSCDA RFESEVREYC VQYSETDFEF ISRLAAEVGL FYYFEHTQDV
HTLIFCDSTS KLSGLKSPFP YNVLSGGVAE NTFVNQFSYQ HQIKPANISL KDYSFKKPQY
SFLQSSKGQE LKFQKPDYEH FDYPGRYKDD AAGVPITQVR QEYLRRDAQV ATGQSNILQA
IPGFKFDLIE HNDRALNRDW ILTSIEHTGE QGAAAEEANT QKPTRYSNQF HAIPGNNPWQ
AEPNSKPLVT GPQIAIVVGP KNEEIFCDEF GRVKVQFPWD RYGESNEHSS CWVRVSQGWA
GGQYGMMAVP RIGHEVIVSF LEGDPDQPII TGRAYHTTNV TPYILPNHKT RTVIKTQSHK
AEGFNELRFE DEASREQIYV HGQKDMDMVI NNIHREEIGY DQHLTVEHDK FELVKQHRHT
TIGQDEIAQV GRDHQVLVGR NLIHRVVGMV KRYIGGGIIT QIDGASQTSI AASEEKIIGA
NQQIKVDNES YLKASKIVLE AGDELTIKGP GGFIKIDSGG VTISGSKVKI NEGGSPGTGT
APKAVKPEEP AKPSIPETAD RR
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