Gene Swoo_2500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2500 
Symbol 
ID6116784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand- 
Start bp3050901 
End bp3051563 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content44% 
IMG OID641634017 
ProductGntR family transcriptional regulator 
Protein accessionYP_001760872 
Protein GI170726846 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0872238 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATTTT TTGATGAAAC AGCAGTAACA GCAGCTGATA AGACCTTTTT TCAGTTACGC 
AAAGATATTG TTGAAGGTGT TGTGTTAGCT GGTTCAAAAC TCAGTGAGAC TGAGTTGTCG 
ACAAAATACA GTGTCAGTCG TGCGATTATA CGTGAAGCGA TTAATCGTCT GGAGTCCTGC 
AACCTTGTTG AGCGCAAAGC CAATGTGGGT GCTCGTGTGG TGGCATTAAC ACCTGAGGGA 
CTGATTGAAC TGTATCAGGT TCGTGAATCC TTAGAGGGGA TGGCAGCGCG CTTAGCTGCT 
AAGAATATGA CTTCCCAAGA GATAGATGAC CTTAACGCTT TACTTAATAC CCACTTTCAA 
AAAGTCAAAA CTGGCGAGTC TTATTACCAG GAAGCTGGCG ACGTCGACTT CCACTATCGA 
ATTATTCTAG GCAGTAAAAA CAGACACCTT ATCACCATGT TGATTGATGG TATTTATCAT 
CTTGTGCGTA TGTACCGAGT GCAGCTAGGG ATGTCAGGGC CTAGGATCAC CACCGCCTTT 
GATGAGCACC GACATATAGT ACAAGCTATA TCGAATCGTG ATGAGGAGCT CGCAGAGATG 
CTGATGCGTC GTCATATCAT GTATTCACAG AGAAATGTCG AAACCAAATT AGAGCAAAGT 
TAA
 
Protein sequence
MTFFDETAVT AADKTFFQLR KDIVEGVVLA GSKLSETELS TKYSVSRAII REAINRLESC 
NLVERKANVG ARVVALTPEG LIELYQVRES LEGMAARLAA KNMTSQEIDD LNALLNTHFQ 
KVKTGESYYQ EAGDVDFHYR IILGSKNRHL ITMLIDGIYH LVRMYRVQLG MSGPRITTAF 
DEHRHIVQAI SNRDEELAEM LMRRHIMYSQ RNVETKLEQS