Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2494 |
Symbol | |
ID | 6116778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3042559 |
End bp | 3043935 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634011 |
Product | MATE efflux family protein |
Protein accession | YP_001760866 |
Protein GI | 170726840 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.121522 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0012501 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCATT ACGGCTTTCA GGCCAAACGT TTAGTGCAGC TTGCACTTCC CGTTCTTATT GCACAAGTTA CTCAAACCAT GATGGGATTT ATTGATACCG TCATGGCGGG GCGAGTGAGC GCGGTAGATA TGGCGGCAGT CGCTATCGGA ACCAGCTTGT GGTTACCTGC GCTACTGTTT GTGCAAGGCT TACTGCTTGC ATTTACACCG GTATTTGCTC ATCACCATGG GGCTAATAAC CAAAAGGCTA TTCAACCACT TGCTTTTCAA GCAGGTTATA TTGCCATAAT TGGTAGCCTA GGTGTGATCC TGTTTCTTAG TTTTGCAGAA AACATCTTCA CCATGATGGA GTTGGAACCT GAATTGGCCC GTTTGAGTAT CGGCTACCTA GAGGGGTTTG CTTGGGGCGT ACCTGCTTTT GTTCTTTATC AAGTATTAAG AGGATGCAGC GAGGGTATCT CTTATACCTT ACCGACCATG ATAATAGGTT TTGTAGGACT TGCTGTGAAT ATTCCTGCTA ACTATATATT TATCTATGGC CATTTTGGTA TGCCCGCTAT GGGAGGAGCT GGTTGTGGTC TAGCGACTGC ATTAGTTTTT TGGGCCATGT TTGTTGCCAT GATTGTGTAT ATGCAGCTAC ATAAAAAGTT TGCAGAGTTA GCGCCTTTTA AGTCATTTCA TAAACCTCAT CTCTCTACAA TATGGGATAT GACTAAACAT GGTTTTCCCA TCGCAATGGC ACTCTTTTTT GAAGTGAGTC TGTTTGCTGT TATTGCACTA CTGTTAGCTC CCTTAGGTGC TAATGTGGTT GCGGGCCATC AAATTGCTTT GAATTTCTCA TCTATTGTAT TTATGTTGCC TTTGTCTATC GGCATTGCGG TATCGATTCG CGTGGGATAT TACTTAGGGC AAGATAAAAC TGAGATATCG GCTTTGATTG CCAAATTAGG TTTAGGTATC TCCTTTACAC TAGCTATGGT GACTGCGGTC ATTACTGTTC TGTTTAGAAC TGAAATTGCT TATCTATATA ACGATAACCC AGAAGTGGTG ACACTAGCAG GAAGCTTAAT GTTTCTTGCT GCTCTTTATC AATTATCTGA TTCGGTGCAA GTTGTCGCGG CCGGGGCGTT AAGAGGATAT AAGGACACAA GAAGTGCTTT TTATATCACT TTGTTCTCCT ATTGGGCTGT TGGCATGTTG CTAGGCTATA TACTAGCAAG AACAGATCTT ATCGTGCCAG CTATGGGGGC TCATGGTTTC TGGATAGGAT TAATCGCTGG CTTAACAACT GCGGCAGTGC TGTTTGCTTT AAGGTTACGT TATATTCAAA AGCGAGGTTT CTTTAAAGAG GCAATTGTAG ATGCCTCAGA TGCGTAG
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Protein sequence | MNHYGFQAKR LVQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAIG TSLWLPALLF VQGLLLAFTP VFAHHHGANN QKAIQPLAFQ AGYIAIIGSL GVILFLSFAE NIFTMMELEP ELARLSIGYL EGFAWGVPAF VLYQVLRGCS EGISYTLPTM IIGFVGLAVN IPANYIFIYG HFGMPAMGGA GCGLATALVF WAMFVAMIVY MQLHKKFAEL APFKSFHKPH LSTIWDMTKH GFPIAMALFF EVSLFAVIAL LLAPLGANVV AGHQIALNFS SIVFMLPLSI GIAVSIRVGY YLGQDKTEIS ALIAKLGLGI SFTLAMVTAV ITVLFRTEIA YLYNDNPEVV TLAGSLMFLA ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWAVGML LGYILARTDL IVPAMGAHGF WIGLIAGLTT AAVLFALRLR YIQKRGFFKE AIVDASDA
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