| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2494 |
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| Symbol | |
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| ID | 6116778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3042559 |
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| End bp | 3043935 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634011 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001760866 |
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| Protein GI | 170726840 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.121522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0012501 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCATT ACGGCTTTCA GGCCAAACGT TTAGTGCAGC TTGCACTTCC CGTTCTTATT
GCACAAGTTA CTCAAACCAT GATGGGATTT ATTGATACCG TCATGGCGGG GCGAGTGAGC
GCGGTAGATA TGGCGGCAGT CGCTATCGGA ACCAGCTTGT GGTTACCTGC GCTACTGTTT
GTGCAAGGCT TACTGCTTGC ATTTACACCG GTATTTGCTC ATCACCATGG GGCTAATAAC
CAAAAGGCTA TTCAACCACT TGCTTTTCAA GCAGGTTATA TTGCCATAAT TGGTAGCCTA
GGTGTGATCC TGTTTCTTAG TTTTGCAGAA AACATCTTCA CCATGATGGA GTTGGAACCT
GAATTGGCCC GTTTGAGTAT CGGCTACCTA GAGGGGTTTG CTTGGGGCGT ACCTGCTTTT
GTTCTTTATC AAGTATTAAG AGGATGCAGC GAGGGTATCT CTTATACCTT ACCGACCATG
ATAATAGGTT TTGTAGGACT TGCTGTGAAT ATTCCTGCTA ACTATATATT TATCTATGGC
CATTTTGGTA TGCCCGCTAT GGGAGGAGCT GGTTGTGGTC TAGCGACTGC ATTAGTTTTT
TGGGCCATGT TTGTTGCCAT GATTGTGTAT ATGCAGCTAC ATAAAAAGTT TGCAGAGTTA
GCGCCTTTTA AGTCATTTCA TAAACCTCAT CTCTCTACAA TATGGGATAT GACTAAACAT
GGTTTTCCCA TCGCAATGGC ACTCTTTTTT GAAGTGAGTC TGTTTGCTGT TATTGCACTA
CTGTTAGCTC CCTTAGGTGC TAATGTGGTT GCGGGCCATC AAATTGCTTT GAATTTCTCA
TCTATTGTAT TTATGTTGCC TTTGTCTATC GGCATTGCGG TATCGATTCG CGTGGGATAT
TACTTAGGGC AAGATAAAAC TGAGATATCG GCTTTGATTG CCAAATTAGG TTTAGGTATC
TCCTTTACAC TAGCTATGGT GACTGCGGTC ATTACTGTTC TGTTTAGAAC TGAAATTGCT
TATCTATATA ACGATAACCC AGAAGTGGTG ACACTAGCAG GAAGCTTAAT GTTTCTTGCT
GCTCTTTATC AATTATCTGA TTCGGTGCAA GTTGTCGCGG CCGGGGCGTT AAGAGGATAT
AAGGACACAA GAAGTGCTTT TTATATCACT TTGTTCTCCT ATTGGGCTGT TGGCATGTTG
CTAGGCTATA TACTAGCAAG AACAGATCTT ATCGTGCCAG CTATGGGGGC TCATGGTTTC
TGGATAGGAT TAATCGCTGG CTTAACAACT GCGGCAGTGC TGTTTGCTTT AAGGTTACGT
TATATTCAAA AGCGAGGTTT CTTTAAAGAG GCAATTGTAG ATGCCTCAGA TGCGTAG
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| Protein sequence | MNHYGFQAKR LVQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAIG TSLWLPALLF
VQGLLLAFTP VFAHHHGANN QKAIQPLAFQ AGYIAIIGSL GVILFLSFAE NIFTMMELEP
ELARLSIGYL EGFAWGVPAF VLYQVLRGCS EGISYTLPTM IIGFVGLAVN IPANYIFIYG
HFGMPAMGGA GCGLATALVF WAMFVAMIVY MQLHKKFAEL APFKSFHKPH LSTIWDMTKH
GFPIAMALFF EVSLFAVIAL LLAPLGANVV AGHQIALNFS SIVFMLPLSI GIAVSIRVGY
YLGQDKTEIS ALIAKLGLGI SFTLAMVTAV ITVLFRTEIA YLYNDNPEVV TLAGSLMFLA
ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWAVGML LGYILARTDL IVPAMGAHGF
WIGLIAGLTT AAVLFALRLR YIQKRGFFKE AIVDASDA
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