| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2471 |
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| Symbol | |
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| ID | 6116746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3020945 |
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| End bp | 3022204 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633979 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_001760843 |
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| Protein GI | 170726817 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000730777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00484475 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTCTC TCGAAAATAC CAAGTACTTT CTATTTCTTA GCTACTTAGC CTTGTTGAGT
ATGTTAGGTT TTATTGCCAC CGATATGTAT CTTCCTGCTT TTAAAGCGAT TGAGGATACA
ATGCAGGCAA GCCCAGCCCA AGTAGCCAGT TCATTGACTT GCTTCTTGGC AGGTTTAGCT
ATTGGACAAC TTCTTTATGG GCCTCTGGTT CAGCGAATTG GTAAACGTAA CTCTCTGTTA
TTGGGTTTAG TTATCTTTGC TGTTGCCAGC TTCGCTCTTG CATCAAGTGA AACAGTACTT
TCTTTCAATA TTGCTCGCTT CTTCCAAGCG TTAGGTGCAT GTAGTGCTGG TGTGATCTGG
CAAGCTATCG TGATTGAGAA GTACGATTCA ATCAAAGCTC AAAATGTATT CTCTAACATT
ATGCCTTTGG TTGCGCTTTC TCCTGCATTG GCTCCTCTGT TAGGTGCATT TATTCTCGAT
ATCAGTAGCT GGCAAAGTAT CTTCTTACTG TTAACTGTTT TAGCTGTGGC CTTAATGCTA
CTTACACTGG CTTTTGTGCC TAAAGAGAAA GCGGCTCATA GCGATGATGT TGCAGTTGCA
CCTATCTCAT ATTTGGGCCT GTTAAAGAAT CCTAAGTATC TTGGTAATGT GATCATATTT
GGTGCATGTT CAGGAGCCTT TTTTGCTTAC CTGACTGTAT GGCCGATAGT GATGGAGCAG
CATGGTTTTG CGGCTAAAGA GATAGGGTTG AGTTTTATTC CGCAGACTAT CATGTTCATT
GTTGGTGGTT ACGCCAGTAA GATCTTGATC CGTAAAGTTG GCGCAGAGAA AACGCTCACC
ATTATGCTGG TTTGTTTTGG CTTATGTGTG CTTTCAATTG TATTGAGTTC ACTGGTCTTT
AAAGCTGACA GTATTCTGCC TCTATTAACG GCGTTTTCGA TACTGGCTGC CGCGAATGGC
GCTATTTACC CAATTGTGGT GAACTGTGCA CTGCAGGAAT TTACTAAGAA TGCCGCTAAA
GCTGCTGGCC TACAGAACTT CTTGCAGATG AGTATCGCTT TTGGTGCATC AAGCTTAGTG
GCTTTATGGG CTGCATCGGG CGAAGTTGCA ATTGGTTGGG GGATCTTATC TTGTGCAATC
TTAGTGTTAG TTGGGTATAA GTTAAGAGTT AATAGCTCTT GGAGTGAGGT TAAAAATCAC
TTTACTACGC CAGATCCAGC TCGTATTGCT CTAGAGCAAG ATAAGCTTAA TCGTGATTAA
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| Protein sequence | MNSLENTKYF LFLSYLALLS MLGFIATDMY LPAFKAIEDT MQASPAQVAS SLTCFLAGLA
IGQLLYGPLV QRIGKRNSLL LGLVIFAVAS FALASSETVL SFNIARFFQA LGACSAGVIW
QAIVIEKYDS IKAQNVFSNI MPLVALSPAL APLLGAFILD ISSWQSIFLL LTVLAVALML
LTLAFVPKEK AAHSDDVAVA PISYLGLLKN PKYLGNVIIF GACSGAFFAY LTVWPIVMEQ
HGFAAKEIGL SFIPQTIMFI VGGYASKILI RKVGAEKTLT IMLVCFGLCV LSIVLSSLVF
KADSILPLLT AFSILAAANG AIYPIVVNCA LQEFTKNAAK AAGLQNFLQM SIAFGASSLV
ALWAASGEVA IGWGILSCAI LVLVGYKLRV NSSWSEVKNH FTTPDPARIA LEQDKLNRD
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