| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2405 |
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| Symbol | |
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| ID | 6116679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2946667 |
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| End bp | 2950566 |
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| Gene Length | 3900 bp |
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| Protein Length | 1299 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641633913 |
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| Product | molydopterin dinucleotide-binding region |
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| Protein accession | YP_001760778 |
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| Protein GI | 170726752 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing
[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.598133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00155962 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTATG TAGTAACTGG GGCGTGTATA GGTGATAAAC ATACCAGTTG TGTTGATGTG
TGTCCGGTGA ATGCTTTTCG CGAAGGCGAA GAGATGTTGT ATATCGATCC GGATGAATGC
ATTAGTTGTA ATGCCTGTTT AACGGAGTGC CCCTCATTAG CCATTTTTCC TGAAGCGTCA
GTTCCAGAAG ATCAATTGCA GTATATAAAC ATTAATGCCA TTGAATCCAA AAAGCACCCA
GTCATTACAG AACGAATTAA TAAGCAGCCA GTTAAAGAAA CGGATGTTTT TCAGTCCAAT
AAACGATTTG CAGTAATCGG CTCAGGGCCA TCAGGTTTTT TTGCCAGTGA AGCGCTACTA
AAACAATACC CGGGCGGCAA TATCGATATC ATTGAAAAGC TGCCAGTGCC TTTTGGTCTA
GTGCGATTCG GTGTGGCACC AGATCACCCC AAAATAAAAT CCGTATCTAA AAACTTTACT
AACCTAATGA AAGACCAGCC GTCTCTTAAA TTTTTTGGCA ATGTCGAGGT GGGTAAAGAT
CTAGATCGTG ATTATTTATT GAATAGCTAT GATGCCGTTA TCTATACCAC GGGTGGGTCA
AGTAGCAAAA CATTGAACAT TCCTGGTAAC GAGTTATCGG GAGTCTATGG TTCAGCGGAA
TTTGTCGGTT GGTATAATGG CCATCCTGAG CAAAAGACCT TAGCACCTAA CCTGAATAGC
TCAGTATTAT CCATCATCGG AATGGGCAAT GTTGCGCTGG ATATTGCGCG TACTGTTTGT
CTGCCTCACG ATGAATTACA TCGTACAGAT GTTGCGCAGC ATGCGCTCGA TGATTTCTTA
ACGAGTGACA TAACACACGT AAATATCATT GCCCGTAAGG GGCCAGCTCA AGCTGCGTTT
ACGCCTAAAG AGCTACAGCA ATTAATCGAT CACCCTGATA TTAATATTGA AGTTGATGAG
AATGAGCTGG TTTTAGATGA CGCTATGGAA GCCTCGCTTT CTTTGCCAGA GAATTCAGAG
GCAAATGAAA ATATTCAATT ATTGCGCAGT ATTGCTACAC GTGAATCAAA TGGAAGTAAA
ACCATACGCT TCATGTTTAA CCGCAACCCA GAAGAACTTA AAGGTCAGGA CGGAGCGGTT
ACTCACCTGA AACTAGGTGT TAATCAGGTT TCATTGGACG GTGATGATCG CTTACAGGTT
AACGCTACTG GTGAGACTGA ATGGCTAGAA ACCGGCGTTG TAGTCACCGC TACAGGCTAT
AAAGGAACGG CCATTAAGGG CTTAGCGTTT GATGACTCAA AAGGTGTGAT TTCAAATGTA
GATGGGCAAG CGAAATTAAG CAATGGGCAG CTGTCTGACA AAGAGTTTGT TGCGGGTTGG
ATAAAGCGTG GTGCCAGTGG CGTCATTGGT ACCAATAAAT CATGTGCAGT TGGCACAGTG
AATCAACTTG TTTCGATATT AGATCAAACA GATAGCATAT CTGAGCAAGC GTCATTACCA
CCTCTAAAGA AATACTTAAG CGAGAAAGGC GTTAATTATT TTAGTGTCTC CGATTGGGCT
GGACTCGATG CATATGAAAT TCAGCATGGT GAACGACTAG GGCGGACGAG ACAGAAACTG
GTCGATCTAG CAGATATGGA GCAGGTTAAA AAAGACAATG CTAATTTAAT CGCCAAAGCG
ACGCCCGAAT ACGACGAACC GATCGTCAAA GAATTCGATG CAAGTAAGCC AGTTAAAAAG
CATCACCGTA CTTGTACTTT GTGCGAAGCC ATGTGCGGGA TTGTGGTTGA GTATCAAGGG
GAAAAAATTG TCTCCATCTC TGGGGATGAG AAAGATCAGC ATAGCTTTGG ACATATTTGT
CCGAAAGGTT ATGCCCTGCA GGATTTACAC AACGACCCTG ATCGAATAAA AACGCCCAAA
AAGCGCATTG GTGATCAATG GGTCGACATG GATTGGGATG AAGCCTTAGA AGAAGTTGCC
CAGCGATTAG TGGCTACCCA AGAAAAATAT GGTAACGATT CGGTAGCAGG ATATTGGGGA
AATCCATCTT CACACAATAT TGAATGTAAC CTGACGGTTG GCCCGTTTCG TAAAGCCCTT
AAATCAAAGA ACTATTACTC TGCCTCGAGC CTTGATCAAA TGCCTCACCA GTTAACGTCT
TATTTGATGT ATGGGCATGG TATGAGCTTT ACTATTCCGG ATATTGATCG TACCGATTAT
ATGTTAATGC TTGGCGCCAA TCCGGCCGCC TCTAACGGTA GCTTAATGAC GGCAGGTGAT
GTACTGGCCC GTTTAGAAAA AATCAAAGAG CGTGGTGGCA AGCTGGTGTT GGTAGATCCA
CGCAGGTCCG AAACCGCGTT ATACGCCAGT GAGCATCAAT TTATTAAGCC CGGTAGCGAT
GCTCTGTTTT TGGTAGGCTT AATCAAGGTC ATCTTTGATA AAGGTTTGAC GAACATCGAT
TCAAGATTGC CAATTAACGG TGATATCGAA GCCCTCGAGT CACTCTTTGA ATTCTTCTCG
ATGGAAACCA TTTCGGAGTT GACCTGTATT CCCATAACTA AAATTGAACG TATCGCCACT
GAATTTGCGA CCGCAGAGAA GGCGGTTTGT TATGGACGAA TGGGTATTTC TGTTCAAGAG
TTTGGTGCAT TAAATCATTG GTTAATTCAA ATATTGAACA TTATCACCGG GAGTTTAGAT
ACTGAAGGTG GCATGATGTT CACCACCCCG GCTATTGATT TGACTGACTT AGGAGGCCGT
GGCAGCTTTA ACATGTATCG CAGCCGTGTT CGGAACTTAC CTGAAGTCAA TAAAGAGTTT
CCAACAGCCA CTATGGCTGA TGAAATGCTG ACACCAGGAG AGGGGCAAAT TAAGGCATTT
GTGGTGACTG CGGGTAACCC TGTTATATCC AGCCCTAATG GCGTTCGATT AGAAAATGCG
TTAGCCAATT TAGATTTTAT GGTTGCCGTT GATTTCTATA TTAATGAAAC CACCAAACAT
GCAGATATCA TTCTTCCCCC AAGCGGCCCG TTTGAGCATG CATTGTATGA TCTTATCTTC
ACCAATTTTG CCGTTAGAAA TGTAAGTCGA TTCTCTGAAG CGTTATTCGA AAAGAAAAGC
TATATGCGCT CTGAGTTCTC CATCTTTAAC ACCCTAACTC ATCGTATTGA AGAGCTAAAA
TCCAGTAAGA AAGGACCTAT AGATCGGGTT AAATTAAAAG CTAAGCATAA GATTCAAGCG
CTCATGACGG TAGAACGAGC TATCGATTTG ATGATTAGAA ATGGTCGCTA CGGGCATGGC
ATGAAGAGCT ATATCACTGG CGGTGGCTTA ACCTTAAAAA AACTTAAAAC ACATCAACAC
GGCCTGGACT TGGGGCCGCT TGAACCGAGA TTGCCAGGAA AGTTATTTAC TAAAGACAAG
AAAATCAATC TGATACCTGA GGTGATGGCT GAGGATTTGA TACGTCTTAA CCAATATGTT
GAAAGAGAAT CCACAAAGGC TGGGACGTTA ACGCTGATTA GCCGACGTGA TTTAAGAACC
AATAACTCGT GGATGCATAA CAGTCAGCGC TTGGTCAAAG GCCAAAATCG CTGTGATTTA
TTTGTTCATC CTGAAACAGC CAATGAATAC GGCATTAAAA CTGACGAACA GGTTCACATC
ACCAGTGCGG TGGGTGCGTT AAAAGTCACC GTAGCCATTA CCGACGAGAT TATGCCTAAC
GTGGTGAGCC TGCCCCATGG CTGGGGCCAC CATAGAAAAG GTATGAAAAT GTCAGTGGCT
CAGTCCAGTC CCGGTGTGAG TGTGAATGAC ATAACAGATC ATAATTTTGT TGATGAACTG
TCTGGAAATG CCGCCCTAAA TGGCGTGCCA GTGAGTATCC AGAAAATATT TAATCAATAA
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| Protein sequence | MAYVVTGACI GDKHTSCVDV CPVNAFREGE EMLYIDPDEC ISCNACLTEC PSLAIFPEAS
VPEDQLQYIN INAIESKKHP VITERINKQP VKETDVFQSN KRFAVIGSGP SGFFASEALL
KQYPGGNIDI IEKLPVPFGL VRFGVAPDHP KIKSVSKNFT NLMKDQPSLK FFGNVEVGKD
LDRDYLLNSY DAVIYTTGGS SSKTLNIPGN ELSGVYGSAE FVGWYNGHPE QKTLAPNLNS
SVLSIIGMGN VALDIARTVC LPHDELHRTD VAQHALDDFL TSDITHVNII ARKGPAQAAF
TPKELQQLID HPDINIEVDE NELVLDDAME ASLSLPENSE ANENIQLLRS IATRESNGSK
TIRFMFNRNP EELKGQDGAV THLKLGVNQV SLDGDDRLQV NATGETEWLE TGVVVTATGY
KGTAIKGLAF DDSKGVISNV DGQAKLSNGQ LSDKEFVAGW IKRGASGVIG TNKSCAVGTV
NQLVSILDQT DSISEQASLP PLKKYLSEKG VNYFSVSDWA GLDAYEIQHG ERLGRTRQKL
VDLADMEQVK KDNANLIAKA TPEYDEPIVK EFDASKPVKK HHRTCTLCEA MCGIVVEYQG
EKIVSISGDE KDQHSFGHIC PKGYALQDLH NDPDRIKTPK KRIGDQWVDM DWDEALEEVA
QRLVATQEKY GNDSVAGYWG NPSSHNIECN LTVGPFRKAL KSKNYYSASS LDQMPHQLTS
YLMYGHGMSF TIPDIDRTDY MLMLGANPAA SNGSLMTAGD VLARLEKIKE RGGKLVLVDP
RRSETALYAS EHQFIKPGSD ALFLVGLIKV IFDKGLTNID SRLPINGDIE ALESLFEFFS
METISELTCI PITKIERIAT EFATAEKAVC YGRMGISVQE FGALNHWLIQ ILNIITGSLD
TEGGMMFTTP AIDLTDLGGR GSFNMYRSRV RNLPEVNKEF PTATMADEML TPGEGQIKAF
VVTAGNPVIS SPNGVRLENA LANLDFMVAV DFYINETTKH ADIILPPSGP FEHALYDLIF
TNFAVRNVSR FSEALFEKKS YMRSEFSIFN TLTHRIEELK SSKKGPIDRV KLKAKHKIQA
LMTVERAIDL MIRNGRYGHG MKSYITGGGL TLKKLKTHQH GLDLGPLEPR LPGKLFTKDK
KINLIPEVMA EDLIRLNQYV ERESTKAGTL TLISRRDLRT NNSWMHNSQR LVKGQNRCDL
FVHPETANEY GIKTDEQVHI TSAVGALKVT VAITDEIMPN VVSLPHGWGH HRKGMKMSVA
QSSPGVSVND ITDHNFVDEL SGNAALNGVP VSIQKIFNQ
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