Gene Swoo_2393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2393 
Symbol 
ID6116664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand- 
Start bp2932790 
End bp2933800 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content43% 
IMG OID641633899 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001760767 
Protein GI170726741 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.444338 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTATCC GCGTAGCAAT TAACGGTTAT GGCCGTATCG GTAGAAACGT TTTACGTGCA 
CTTTATGAAA GCGAAAAGGA TTACCCAATC CAGATTGTTG CTCTTAATGA TCTAGGTGAT 
GCTTCGATCA ATGCACACTT GACTAAGTAT GATTCTGTTC ATGGCCGTTT TAACGCTAAA 
GTCGATCATG ATGCAGAAGC TATCTATGTT AATGATGACA AAATCCTCAC ATTCTCTGAA 
AGAGACCCAG CTAAACTTCC TTGGGCAGAG CTAAATGTTG ATGTGGTCTT TGAATGTACT 
GGTATTTTCA CTTCTAAGGA AGCAGTACAA CCACACCTCA CTGCAGGTGC CAAGAAAGTA 
CTTATCTCAG CCCCTGGTAA GAATGTGGAC GCAACCGTAG TCTACGGTGT GAACAACAAC 
GAAATTACTG CTGATATGAC AGTGATCTCT AATGCTTCAT GTACCACTAA CTGCCTTGCA 
CCATTCGCTA AGCCACTAAA TGATGAGATT GGTATTGAAT CTGGCTTAAT GACAACGATT 
CACGCGTACA CAAATGATCA GCGTCTATCT GATGTTTACC ATACAGATCT TCGTCGTGCT 
CGTGCTGCTG CAATGTCGAT GATCCCAACT AAGACTGGCG CAGCAGCTGC TGTTGGTCTT 
GTTGTTCCGG AACTTGCTGG TAAGTTTGAT GGTTTAGCTG TTCGTGTTCC TACTGTGAAC 
GTGTCACTGG TTGATCTATC TTTTATTGCA GCGCGTGATA CGACCGTAGA AGAGGTTAAT 
GCCATCATTG AAAGTGCAGC GTCACTTTCT CCAATGAATG AAGTGTTAGC GGTTAACAAG 
GAGCCTTTGG TCTCTATTGA CTTTAACCAT AACCCATTCT CATCAAACTT TGATGCGACT 
CAAACACGCG TTAATGGTCG TTTAGTTAAA GTAATGGCTT GGTATGACAA TGAGTGGGGC 
TTCAGTAATC GTATGCTCGA TAACGCTGTT GCACTAATGA CTGCTAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKDYPI QIVALNDLGD ASINAHLTKY DSVHGRFNAK 
VDHDAEAIYV NDDKILTFSE RDPAKLPWAE LNVDVVFECT GIFTSKEAVQ PHLTAGAKKV 
LISAPGKNVD ATVVYGVNNN EITADMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAAMSMIPT KTGAAAAVGL VVPELAGKFD GLAVRVPTVN 
VSLVDLSFIA ARDTTVEEVN AIIESAASLS PMNEVLAVNK EPLVSIDFNH NPFSSNFDAT 
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMTAK