| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2389 |
|---|
| Symbol | |
|---|
| ID | 6116660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2929252 |
|---|
| End bp | 2930592 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633895 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001760763 |
|---|
| Protein GI | 170726737 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.986344 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAA AACAATACGA TCCTTTAATA TCTACAACCC CCGCATCACA AAACTGGCCA
AACTCCTATT GGGCAAGTAC CGTTCAAGCG CAGCAAGAGT CCCCATCCCT TCAGAGAAAT
ATCCAGACAG ATGTTGTCGT GATAGGTGGT GGTTATACAG GGCTACTAAC CGCTTATTAT
CTTGCCGAAG AGTTTAATAT CGATGTATGT GTAGTAGAGG CGAATGCTGT TGGGTTTGGT
GCCAGTGGAC GCAATGCAGG CTTCGTATTA AAGGGCTCAG GTCGTCTAGG TTACACTCAA
ATAGCAAAAA AGTGGGATCT CGATGTCGCA AAGGGCATCT ATCAGGAGTT TAGTGAAGCG
GTAGAGCGTG TCGACTCATT AATAACTTCG AACCAAATAG CCTGTGACCC CCAAGAAAAG
GGGTACTTAA AAGTTGCTCA TAATCCAAAA GCGATGAAGC AGCTTACACT CGCTTCTAAT
TTCATTACTA CTGAGTTAGG TGGGCAAGCT GAACTACTTT CACTAGAGCA GCTAACTGAA
AATTACATGC ATAACCACCA AGCCTATGGC GCCTTAAGGT TAGATGATGG GTTTGGTATT
AACCCGTTAA AGTTAGTTCT AGGTTACAAG TCGTTAGTTC AAAATACTAA AGTATCTATT
TTTGAAAATA CCTGTATTCA TCACTGGTTT GAAGAGGGGG GGAAGCATAG ATTAGTCACA
TCGGGTGGCG AGATCACAGC CAATAGAGTT ATCTGCGCCG GTAACGCATA CACACCAAAA
ACATTTAACC GTCGTGTTGA TGATAAGTAC CTACCTATCT TAAGTAATGT CATTGTTACA
GAGCCACTGA CGGATGCCGA ATTACAAGAA GCGGGACTCA AAACCCACCA AGTCACTATG
GATACCCGCT TACTTAAATA TTATTACCGC CTATTACCCG ATAACCGATT ACTTTTGGGA
GGACGAGGAG CCATTACAGG TAAAGATGCA CAGGATCCCA TTTATGCACA AAGATTAAAG
TATGCGCTCG CCCAATGTTT TCCTGTTCTT GCCAACAAAG CTATCGATTA TAACTGGACT
GGCTGGATAG CGGCTGCTAT AGATGATATG CCCCACGTTT ATCAAAAAGG TGGAGTGGGC
TACAGCTTAG GTTATTGTGG CTCAGGAGTC TCTTTTAGTG CGCAAGCTGC CTACCGATTG
GCTCAAACCT TAGTAGGTAT CAAAACACCC GATCTGCCAC TCTACCGTCA ACCCTTACCC
CCATTTCCAT TTGCACGAAT GAGACGAGTA GGACAGTGGG GTTATTATCA TTATGCTTGG
ATGAGAGACA AGTATGGTTA A
|
|---|
| Protein sequence | MTLKQYDPLI STTPASQNWP NSYWASTVQA QQESPSLQRN IQTDVVVIGG GYTGLLTAYY
LAEEFNIDVC VVEANAVGFG ASGRNAGFVL KGSGRLGYTQ IAKKWDLDVA KGIYQEFSEA
VERVDSLITS NQIACDPQEK GYLKVAHNPK AMKQLTLASN FITTELGGQA ELLSLEQLTE
NYMHNHQAYG ALRLDDGFGI NPLKLVLGYK SLVQNTKVSI FENTCIHHWF EEGGKHRLVT
SGGEITANRV ICAGNAYTPK TFNRRVDDKY LPILSNVIVT EPLTDAELQE AGLKTHQVTM
DTRLLKYYYR LLPDNRLLLG GRGAITGKDA QDPIYAQRLK YALAQCFPVL ANKAIDYNWT
GWIAAAIDDM PHVYQKGGVG YSLGYCGSGV SFSAQAAYRL AQTLVGIKTP DLPLYRQPLP
PFPFARMRRV GQWGYYHYAW MRDKYG
|
|---|
| |