Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2380 |
Symbol | |
ID | 6116651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2918915 |
End bp | 2919631 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641633886 |
Product | pseudouridine synthase |
Protein accession | YP_001760754 |
Protein GI | 170726728 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0555647 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.85539 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCAC AAGCAGATCC CTTTATCGTC CCTCTATGTC TAGATGAGAT CCAGATACTT TTTGAAGATG AGCATATCTT GGTGATCAAT AAGCCTAGTG GTTTGCTGAG TCTATCGGGT AAGCACCCGT TAAATATTGA TTCTGTTCAC CATCGTTTAG CTAAGATCTA TCCCGGGTGC ACCCTGATAC ACCGACTAGA CTTTGGTACC TCAGGTATTA TGGTTTTGGC TAGGAATAAG GTGATTAACG CATTACTATG TAAGCAGTTT AGCGAGCGTC GAGTCAGCAA GCGTTACACA GCATTACTAC AGGGAACTGT AGAGAACGAC TCAGGAATCG TGGATATTGG CATAGCAAAG GATACGGAAA ACTTTCCATT AATGAGACTG TGTAATCGGA CAGGCAAACC AGCAAAATCT CAATATGAAG TGTTATCAAG GTTCACTCAA ACTGCACAAG ATAGCTTCTA TGTAGATGAT CACAGGGCAG GGGAAAGAGC TGTTTCACTG GTTGAGTTTG AGCCAATAAC TGGGCGAACT CATCAACTTA GACTCCATAG CAAACACTTA GGCCATCCTA TATTGGGCTG TGACCTCTAT GCCACCGACG AAGCATTTTT TATGACCAGT CGTCTAATGT TACATGCATC TCTACTTACT TTTGAGCATC CCGTTAGCAC TAAAACGATG ACAATAAAGT GTAACAGGCC ATTTTAA
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Protein sequence | MQPQADPFIV PLCLDEIQIL FEDEHILVIN KPSGLLSLSG KHPLNIDSVH HRLAKIYPGC TLIHRLDFGT SGIMVLARNK VINALLCKQF SERRVSKRYT ALLQGTVEND SGIVDIGIAK DTENFPLMRL CNRTGKPAKS QYEVLSRFTQ TAQDSFYVDD HRAGERAVSL VEFEPITGRT HQLRLHSKHL GHPILGCDLY ATDEAFFMTS RLMLHASLLT FEHPVSTKTM TIKCNRPF
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