Gene Swoo_2380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2380 
Symbol 
ID6116651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2918915 
End bp2919631 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content43% 
IMG OID641633886 
Productpseudouridine synthase 
Protein accessionYP_001760754 
Protein GI170726728 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0555647 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.85539 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCAC AAGCAGATCC CTTTATCGTC CCTCTATGTC TAGATGAGAT CCAGATACTT 
TTTGAAGATG AGCATATCTT GGTGATCAAT AAGCCTAGTG GTTTGCTGAG TCTATCGGGT
AAGCACCCGT TAAATATTGA TTCTGTTCAC CATCGTTTAG CTAAGATCTA TCCCGGGTGC
ACCCTGATAC ACCGACTAGA CTTTGGTACC TCAGGTATTA TGGTTTTGGC TAGGAATAAG
GTGATTAACG CATTACTATG TAAGCAGTTT AGCGAGCGTC GAGTCAGCAA GCGTTACACA
GCATTACTAC AGGGAACTGT AGAGAACGAC TCAGGAATCG TGGATATTGG CATAGCAAAG
GATACGGAAA ACTTTCCATT AATGAGACTG TGTAATCGGA CAGGCAAACC AGCAAAATCT
CAATATGAAG TGTTATCAAG GTTCACTCAA ACTGCACAAG ATAGCTTCTA TGTAGATGAT
CACAGGGCAG GGGAAAGAGC TGTTTCACTG GTTGAGTTTG AGCCAATAAC TGGGCGAACT
CATCAACTTA GACTCCATAG CAAACACTTA GGCCATCCTA TATTGGGCTG TGACCTCTAT
GCCACCGACG AAGCATTTTT TATGACCAGT CGTCTAATGT TACATGCATC TCTACTTACT
TTTGAGCATC CCGTTAGCAC TAAAACGATG ACAATAAAGT GTAACAGGCC ATTTTAA
 
Protein sequence
MQPQADPFIV PLCLDEIQIL FEDEHILVIN KPSGLLSLSG KHPLNIDSVH HRLAKIYPGC 
TLIHRLDFGT SGIMVLARNK VINALLCKQF SERRVSKRYT ALLQGTVEND SGIVDIGIAK
DTENFPLMRL CNRTGKPAKS QYEVLSRFTQ TAQDSFYVDD HRAGERAVSL VEFEPITGRT
HQLRLHSKHL GHPILGCDLY ATDEAFFMTS RLMLHASLLT FEHPVSTKTM TIKCNRPF