| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2329 |
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| Symbol | emrD |
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| ID | 6116600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2860531 |
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| End bp | 2861757 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641633835 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_001760703 |
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| Protein GI | 170726677 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000177786 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.11383 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGACT TACAGAAGAA GTCGAACCTT AGCGCACAAC ACCAAGGCTT CTCTTCACTC
ATATTTCTAA TCGTTATCAT AGTGGCATGC GGACAGATGG CTCAAACCAT CTTTGTACCT
GCATTGCCCG ACATTGCAAA CAGCTTCAGC ATTGACGCGG GTCAGCTGCA AGCAATTATG
GCATGTTACC TACTCTCTTA TGGCTTATTA CAGTTTATCT ATGGCCCAGC GTCAGACAGA
CTTGGACGTA AGCCTGTACT AATATTTGGG ATCACGCTCT TTGTTATAGG TGCGTTTATT
GCGAGTATTG CAAACAGTTA TCAGCTTTTA ATCGCCGCTA CGCTCTTGCA GGGCGCGGGT
ACAGCGAGTG CTGGTGCGCT ATGTCGCAGT ATTCCAAGGG ATCACTACTT TGGTGAGCCA
CTGGTCAAAT TCAACAGCTT TGTGTCTATG GCCGTGGTGT TTTCACCGCT TATTGCCCCG
TTTGCAGGCA GCTTAATGAC CCACTATTTT GGCTGGCAGT CGGTATATAG CTTTTTAGCG
CTATTTGGTC TTTTTGTACT GCTATTGATC ATCACAAGGT TTAAAGAATC CCTTCCTGCT
GATCAGCGCA AGCCTGAACC TGTTACACAC TCTTATCGCT TTGTATTGGC TAACAGGAAA
TTTAAAAACT ACCTTGTGTG CCTGGTTGCC ACCTTTGCAG GCATTGCAGC CTTTGAAGCT
GTTGCTGGAG TACTCTATGG CCAAGTGCTG CAACTCTCGC CATTTTGGGT AAGCTGCTAC
TTTGTCGCGC CTATTCCTGG TTACCTTGCT GGTGCTTATT ATGCGGGTAA GTTAAGTGAC
AATAGTAAAG GCATGTATCA CAGTGTTGCC CTACTTGGCG CTGGTGCACT ATTTTTGTTG
ATCCCTGGGT TATCAAACCT AGTAATAGGT TGGAGCCTAC TTGTTGGCTC TGTTCTCTTT
TTTACTGGTG CGGGGATCCT GTTTCCAGTA TTAACCTCTG CCGCATTGGA ACCTTTCCCA
AGGCATGCTG GTGTTGCTGG TGCGCTACTT GGTGGCTTAC AGAACTTTGG TGCGGGCATT
GCCGCGCTAA TGATGTCTTT GGTCCCCATG CACGGACAGT TCAGTGTCGG CGCTCTGTGC
GCTGTCATGG TGGTCTTGGT TGTACTGGCA TTAAACGCTG CCAAGTCCGG CACGGATCTG
GATAAAACCG ATGTTGCAGT GTTATAA
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| Protein sequence | MSDLQKKSNL SAQHQGFSSL IFLIVIIVAC GQMAQTIFVP ALPDIANSFS IDAGQLQAIM
ACYLLSYGLL QFIYGPASDR LGRKPVLIFG ITLFVIGAFI ASIANSYQLL IAATLLQGAG
TASAGALCRS IPRDHYFGEP LVKFNSFVSM AVVFSPLIAP FAGSLMTHYF GWQSVYSFLA
LFGLFVLLLI ITRFKESLPA DQRKPEPVTH SYRFVLANRK FKNYLVCLVA TFAGIAAFEA
VAGVLYGQVL QLSPFWVSCY FVAPIPGYLA GAYYAGKLSD NSKGMYHSVA LLGAGALFLL
IPGLSNLVIG WSLLVGSVLF FTGAGILFPV LTSAALEPFP RHAGVAGALL GGLQNFGAGI
AALMMSLVPM HGQFSVGALC AVMVVLVVLA LNAAKSGTDL DKTDVAVL
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