Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2299 |
Symbol | |
ID | 6116570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2821812 |
End bp | 2823653 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633805 |
Product | signal peptide peptidase SppA, 67K type |
Protein accession | YP_001760673 |
Protein GI | 170726647 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000354581 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.336297 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCGATA AACCCTCATT AATAAAAAGA ATATTTGTTC TTTTATGGAA GACAATTAAC GGTACACGGA AACTGATTTT AAATGTGATC TTTTTCGGTT TCCTGTTGGC GCTGATTGTT GCTATGAATA TAGATGATAG TGTGAATATT GAAACTGGGT CAGCATTAGT ACTCAACCTT TCAGGTTCTA TTGTTGAGCA AAAAAGACAA GTAGACCCAT TTGAAGAGGC GATGAAAAGC GGCAAAAACA ACGACGGCCA AGGCGAGATA TTACTTGCCG ATGTGCTTAA TGTGATCGAC AACGCCGCTC ATGACACTCG CATCTCTTCC ATCGTGTTAG ATATGGGGCA TTTAAGATGG ACAGGAATAA GCAAGCTGCA ATCTATTGGC GATGCCTTAA TCCAGTTTAA AGAATCGGGC AAACCTGTTA TTGCACAAGC TAATAGCTAT GGCCAAAATC AATATTTTCT CGCCAGCTTT GCCGATACCA TCTACCTCAA CCCACAGGGC GGTGTTGAAC TAGAGGGCTT GAGCCGTTAT CGCCAGTATT ATAAGTCAGC ACTTGAGAAG CTTAAAGTGA AGGCGCACAT CTTCCGAGTC GGTACCTTTA AATCGGCTGT TGAACCCTAC ATTCGTGATG ATATGTCTCC CGCAGCAAAA GAAGCCAACC TTGCGCTGTT GAATGATATC TGGAGCAGTT ATCAAGGCGT TGTTGCCGAT AATCGTAATA TTGCAGGTGA CGACCTTGTA CTCAACTCTG AACGCTACCT CGCAGAGCTT GATAAAGCTG AAGGTCAGTC TGCTGAAATG GCACTGAATA TGAACTGGGT CGATGAACTC GCAACGTCAG AAAGCTTCAG GCTTAAGATG TTAGACTTGG TTGGACAGGC AAGAGATGGC GATAATTTCA AACAGATAGG CTTTCATGAC TACTTAAGTC TCACCGCTAA GCACCCTCTT CTTTATACCA ATGATACTGT CGGTATCATT GTTGCCAAAG GTACCATACT CAACGGCAAC CAGCCTGCTG GTAATATTGG CGGTGAAAGT ACCTCAGAAC TCCTTAGAAA GGCGCGCTTT GATGATCAAG TAAAAGCCGT TGTGTTACGA GTCGATAGTC CAGGCGGAAG CGCCTTTGCT TCCGAGCAGA TCCGTCAAGA GGTACTTGCA CTGAAAACTG CAGGCAAACC CGTTGTCGTC AGTATGGGCA GTTACGCAGC GTCGGGTGGA TATTGGATCT CAGCCAGCGC AGATTACATC TACGCCACAC CAACAACACT CACAGGTTCA ATCGGCATCT TTGGTATGAT CACCACTTTT GAAGATTCGC TATCAAGTAT AGGGATCCAC ACTGACGGTG TAGCAACCTC TGAATGGGCT GGCATCTCAG TGGCGAAAGG ATTAACCCCA GGTATCAAAG ATGTGATCCA ACGTCACGTT GAGCGTGGTT ATCATGATTT TATCTCTCTT GTGGCCAACG AGCGTGATAT GAGCTTAGAT GATGTGGATA GCATAGCTCA AGGTCGTGTC TGGTCAGGAA GAAAGGCACT TAGCCTTGGC TTAGTTGATG AGTTAGGCGA TCTAAAACAA GCCGTCGCTA AAGCTGCTCA GATGGCAGAA CTCGATGACT TTGACAGTGA AATAATTGAG CAAGATCTCA CGCCTCAAGA GCAGTTTATT CAAGAGATGT TCGCTTCAGC GTCAGCCTAT TTGCCTGAAT CTATGAGTCA TAGTTCTGTG ATTGAGCAGC TACTGTCTCA ATGGTCTAGC GCCATTGATG AATTTAGATC CTTTGATGAT CCTAAAGGCA TGTATCTGTA CTGCGATACC TGTAACTTCT AG
|
Protein sequence | MSDKPSLIKR IFVLLWKTIN GTRKLILNVI FFGFLLALIV AMNIDDSVNI ETGSALVLNL SGSIVEQKRQ VDPFEEAMKS GKNNDGQGEI LLADVLNVID NAAHDTRISS IVLDMGHLRW TGISKLQSIG DALIQFKESG KPVIAQANSY GQNQYFLASF ADTIYLNPQG GVELEGLSRY RQYYKSALEK LKVKAHIFRV GTFKSAVEPY IRDDMSPAAK EANLALLNDI WSSYQGVVAD NRNIAGDDLV LNSERYLAEL DKAEGQSAEM ALNMNWVDEL ATSESFRLKM LDLVGQARDG DNFKQIGFHD YLSLTAKHPL LYTNDTVGII VAKGTILNGN QPAGNIGGES TSELLRKARF DDQVKAVVLR VDSPGGSAFA SEQIRQEVLA LKTAGKPVVV SMGSYAASGG YWISASADYI YATPTTLTGS IGIFGMITTF EDSLSSIGIH TDGVATSEWA GISVAKGLTP GIKDVIQRHV ERGYHDFISL VANERDMSLD DVDSIAQGRV WSGRKALSLG LVDELGDLKQ AVAKAAQMAE LDDFDSEIIE QDLTPQEQFI QEMFASASAY LPESMSHSSV IEQLLSQWSS AIDEFRSFDD PKGMYLYCDT CNF
|
| |