| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2213 |
|---|
| Symbol | |
|---|
| ID | 6116483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2716532 |
|---|
| End bp | 2718760 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641633721 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001760590 |
|---|
| Protein GI | 170726564 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0024682 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAA AGCGCGACTA CAGTATTCCT GAACTACCCA GTATGACTAA TTCCAGTGTC
AGTGTTAGGC GTTATGGTTC GATTTTAGCC ATGTTGCTTG ATGCCTCGCC CTTAAAAGAT
ATCTTAGACT CCTTAGTCTT ACTAATAGAG GAGGAGAAGC TTGGAACGAT AGGCTCCATC
TTGCTACTTA GCGATGACGG ACAGCGTTTG TTAACTGGTG CAGCCCCCAA TCTACCCGAT
AGTTATAATG AGGCTATCCA TGGGATTGAA ATCGGTGAGG GGGTTGGGTC GTGTGGAACC
GCCGCTTTTC GCGGTGAGCG GGTTATTGTT GAAGACATTA GTAGCCATCC CTATTGGGAG
CCTTTCAAGG CGCTTCCATT AGCAGCAGGA CTACAAGCAT GTTGGTCTGA GCCCATCAAG
AATAACGAAA ACAGGGTACT TGGCACTTTT GCGATGTACT ATGACACTGA AAAGTCTCCC
ACAGAGATGG ATCTTGTTTT GATCCGTGAG GCTGCTAGGC TTGCCAGTTT AGCGATTGAG
CGCAGTAGAG CGCTGCAGTT TCAACGCCTA ACTGCAAATA TATTTAATCA CTTACCGATG
GCGATGGTGA TAACCAATCA GTTGGGCTCA ATACTCGATG CCAACCCCAC ATTTTATCAG
ATGTTAAATG CCTGCCCTGA TAAATATCAT CATTTTGAAC CTGAGATCTT TTTTAAATCA
TCAGGTCATA AGCTCAACTC TATGTTAGCC CAGTTAAAAC TGAAAGAGAG TTGGCAGGGT
GAACTACTTG GCTGCAGGCT CGATGGTGAG CATTTTCATC TTGATCTGAC TGTCAGTGTG
TTTAAAGACC CAGCCTCTGA TGAGCGCCTT TATTCATGGC TCTTTAGTGA TATCAGTGAG
CGAAAAAAAG CGAGTGAAAT TATTGATTTT CAGGCTAATT ACGATTCTTT AACTCACTTA
GCGAACCGTA ACCACCTGTT TAAAGCCATG AATGCTGAAA TTGAGTCCGA TAGGCTCAAT
CCAGGCTTTG GTTTTATGTT GATGGATCTG GATAACTTTA AGCAAGTTAA TGATACTTTA
GGACATGATA AAGGTGATCA ACTCCTGCAA GCTGTGTGTA AACGTATTCA GGCTTGTATT
AAAGAGAGTG CGTTACTAGC TAGGCTAGGT GGTGATGAGT TCGCGCTTTT GTTGCCCGAT
ATGGTGAAAG AGTGCGAACT ACAGCTATTA GCTAATGAGA TTAATGAAGC CGTATCAGTT
CCCTATATTT TAGGAGGAGA CAAACAAGTT TTAACCAGTA TTAGCATAGG TATCGCTCGC
TTTCCTGAAG ATGCGATGAG TTTGGAGCAA GTATTAAACT GTGCTGATCA AGCCATGTAT
ATCTCAAAAG ATGAGGGCAG GAATTGTTTT CATTTCTTTA CTGAACAGAT GCAGCAAAAC
GCTGAATACA CGGCAAAAAT GCATACATCG CTTAAGTTAG CACTAGAGTC AAATGCATTC
GAGCTATATT TTCAGCCTAT TCTCTGCCTT GATACTCATC AAATTGTGCG TGCAGAGGTG
TTATTAAGGT GGCAGGATGA AGGGCAGTTT ATACCTACAG ATGAGTTTAT TGCACTGGCT
GAAAGTAGTG GTTTAATCGT AGATATTGGA CATTGGGTTC GTCAAGAGGC GATGTCATTT
CTGATTGAAC TGCAAAATAT TGCTCCAGAT ATTGGTTTGT CGATCAACGT ATCAATGTAT
GAGTTTTGGT CACACTCTCT ACAAGATAAC CTTGTGAATT CGATTCAACA TATTGCCAAA
GAGTTGAGCT GTGATGCTTT CCCCTTTGAG ATGGTCACCA TAGAGATCAC AGAATCTCTT
TTAATGAAGC AGCATACTCA CCTTATTGAT TCTCTTAATA AGCTTAGGGA GATGGGGATA
AAAATCGCAG TTGACGATTT CGGCACTGGT TATTCATCTT TATCCTATTT AAGTCATTTT
CCAATAGATC AGATCAAAAT AGACAAAAGC TTTATCCAAG ACTCTGGTAT ATCAAAAAAA
CAACAAGCGT TAGTTGAAGC TATTACGACA CTTAGTCATG CATTGGAGCT GCATGTGATA
GCTGAAGGTG TTGAAACCAA AGAGGAGCTT CAGTTCGTTA AGAATGCGGG AATAGAAGCA
GTTCAAGGCT ACTATTTTTA TCGACCTATG ACTAAATCGT CGCTGATTGA GTTACTCAAT
AAACGTTAA
|
|---|
| Protein sequence | MNIKRDYSIP ELPSMTNSSV SVRRYGSILA MLLDASPLKD ILDSLVLLIE EEKLGTIGSI
LLLSDDGQRL LTGAAPNLPD SYNEAIHGIE IGEGVGSCGT AAFRGERVIV EDISSHPYWE
PFKALPLAAG LQACWSEPIK NNENRVLGTF AMYYDTEKSP TEMDLVLIRE AARLASLAIE
RSRALQFQRL TANIFNHLPM AMVITNQLGS ILDANPTFYQ MLNACPDKYH HFEPEIFFKS
SGHKLNSMLA QLKLKESWQG ELLGCRLDGE HFHLDLTVSV FKDPASDERL YSWLFSDISE
RKKASEIIDF QANYDSLTHL ANRNHLFKAM NAEIESDRLN PGFGFMLMDL DNFKQVNDTL
GHDKGDQLLQ AVCKRIQACI KESALLARLG GDEFALLLPD MVKECELQLL ANEINEAVSV
PYILGGDKQV LTSISIGIAR FPEDAMSLEQ VLNCADQAMY ISKDEGRNCF HFFTEQMQQN
AEYTAKMHTS LKLALESNAF ELYFQPILCL DTHQIVRAEV LLRWQDEGQF IPTDEFIALA
ESSGLIVDIG HWVRQEAMSF LIELQNIAPD IGLSINVSMY EFWSHSLQDN LVNSIQHIAK
ELSCDAFPFE MVTIEITESL LMKQHTHLID SLNKLREMGI KIAVDDFGTG YSSLSYLSHF
PIDQIKIDKS FIQDSGISKK QQALVEAITT LSHALELHVI AEGVETKEEL QFVKNAGIEA
VQGYYFYRPM TKSSLIELLN KR
|
|---|
| |