| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2210 |
|---|
| Symbol | |
|---|
| ID | 6116480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2711917 |
|---|
| End bp | 2713677 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633718 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001760587 |
|---|
| Protein GI | 170726561 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.408019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00161183 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAACT CATTCGAGCA ATCACTTTTG TGCTTTACAA AAAAACAACA AGGGTGCAAC
TGGCTAGAGT TTTTGTTCTC AAGTTGGTTA TTAATTTTTT TAGGGGCGGC AATGACTCAG
GTTTCGACTC AGCTTTCTTG GTGGCGCGGT GCGGTGATCT ATCAGATCTA TCCACGTAGT
CTGCTTGATA CCAACGGAGA CGGTGTTGGT GATCTACAGG GCATTATTCA AAAGCTTGAT
TATATCGCTA GCCTGAATGT GGATGCTATT TGGATCTCTC CATTTTTTAA GTCACCAATG
AAAGATTTTG GTTATGACAT CAGTGACTAT CGTGATGTTG ACCCCATGTT CGGCACGATG
AATGATTTCG ATAAGCTGAT TGTTAAGGCG CACGCGTTAG GTATTAAGGT GGTGATCGAT
CAAGTGCTAA GTCATACATC AGATCAGCAT CAGTGGTTTA TCGATAGTCG TGAAAGTAAG
ACGAATGCTA AAAGTGATTG GTATGTATGG GCTGAGCCAA AAGAAGATGG GACGGCGCCC
AATAACTGGT TAGCTATTTT TGGCGGTTGT GCTTGGGAGT GGGAACCTAG GCGTCAGCAG
TATTACCTGC ATAATTTTTT AACGAGTCAG CCTGATCTTA ATTTTCATCA TCCAGAGGTA
AGGCAAGCGG TACTCGATAA TGTTGAGTTT TGGCTTAAAA AGGGAGTTGA CGGTTTTCGG
TTAGATGCGA TCACTTTTTG TTATCATGAT GAACTGCTTA GAGACAACCC GCCTAAGCCA
AAGGATAAGC GCCAAGGCCG CGGCTTTAGT GAAGACAACC CTTACGCATA CCAATATCAC
TACTTCAATA ATACCCGCCC ACAAACCTTA GGGTTTATTG AGGAGCTAAG AGCATTAGTG
GATAGGTATC CAGGTGCTAT GACCTTAGGT GAGGTCTCAT CAGAAGATTC ACTCTCTACG
ATGGCTCAAT ACACCCAAGG TGAGGGGCGA TTGCATATGG CCTATAGTTT TGAGCTACTG
ACCGAAGATT TTAGCGCAGC CTACATAAGA CAAACGGTGG AAGAATTAGA GGCTAGCATT
GGCGATGGAT GGCCTTGTTG GGCCATTGGA AATCATGATG TGCAGCGTGT GGCAACGCGT
TGGGGTCGAA ACTGTAGTGA TCCCAATATG GTGAAGATGT TAACTGCCAT GCTGTGCTCT
CTACGTGGCA GTGTTTGTAC TTACCAAGGA GAGGAGTTGG GACTCACAGA GGCTTCGATC
GATTTTGAGC AGTTGCAAGA CCCCTTTGGT ATCGCTTTCT GGCCCAAGTT TAAGGGGAGA
GATGGATGCC GCACTCCACT ACCTTGGACC AACAGTGATA AGGGGGCGGG CTTTAGTGAT
GGGGCACCTT GGCTTCCTGT CGCTAAAGAG CACTTGTCTG CATCAGTAGC AGGGCAGGAA
TCTAATCAGG ATTCAGTACT CAATGCATAT CGACAGTTTC TGCAGTGGCG ACGTGAACAT
ACGCCACTTA TTCAAGGTGA GATCAAATTT ATTGATGCAC CGGAGTCCAT TCTCGCTTTT
ATTCGTGAAG CTGAAGGTAT TCGCTATTTT ATCTGTTTCA ACCTTAGCGA TAAGTGCACT
GAATATAGAT TCAGCTTAAG TGGTGAAGTC GATGCGAAGA AGCTTGATGT TCTCAGTGGT
CATGGGCTAG TGACTGGTCG ATTGATAGAC GGTGGCCTTG CGTTACCTGC TTACTCAAGT
TTTTATGGCG TATTAACGTG A
|
|---|
| Protein sequence | MLNSFEQSLL CFTKKQQGCN WLEFLFSSWL LIFLGAAMTQ VSTQLSWWRG AVIYQIYPRS
LLDTNGDGVG DLQGIIQKLD YIASLNVDAI WISPFFKSPM KDFGYDISDY RDVDPMFGTM
NDFDKLIVKA HALGIKVVID QVLSHTSDQH QWFIDSRESK TNAKSDWYVW AEPKEDGTAP
NNWLAIFGGC AWEWEPRRQQ YYLHNFLTSQ PDLNFHHPEV RQAVLDNVEF WLKKGVDGFR
LDAITFCYHD ELLRDNPPKP KDKRQGRGFS EDNPYAYQYH YFNNTRPQTL GFIEELRALV
DRYPGAMTLG EVSSEDSLST MAQYTQGEGR LHMAYSFELL TEDFSAAYIR QTVEELEASI
GDGWPCWAIG NHDVQRVATR WGRNCSDPNM VKMLTAMLCS LRGSVCTYQG EELGLTEASI
DFEQLQDPFG IAFWPKFKGR DGCRTPLPWT NSDKGAGFSD GAPWLPVAKE HLSASVAGQE
SNQDSVLNAY RQFLQWRREH TPLIQGEIKF IDAPESILAF IREAEGIRYF ICFNLSDKCT
EYRFSLSGEV DAKKLDVLSG HGLVTGRLID GGLALPAYSS FYGVLT
|
|---|
| |