| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2199 |
|---|
| Symbol | |
|---|
| ID | 6116469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2693791 |
|---|
| End bp | 2694936 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633707 |
|---|
| Product | cupin 4 family protein |
|---|
| Protein accession | YP_001760576 |
|---|
| Protein GI | 170726550 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2850] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00219592 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000043993 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAC TTGAACTCGG TGAGTTAACC CCTGAACAAT TCTTGAAAGA GTATTGGCAA
AAAAAACCGT TAGTTATCCG AAAAGGTTTC TCTAACTTCA GAGACTTACT CTCACCTGAA
GAGATGGCTG GTTTAGCTTG TGATGAGATG GTTGAGTCTC GCCGTATCTA TAAAGAGCAG
GGGGAATGGC AAGCTGAGTT TGGCCCATTC GATAGCTATG AACATCTTGG TGAGTCAGGT
TGGACTTTGG TGGTTCAAGC GTTGAACAAC TGGCTTCCGG GTGCAGAACA ATTGATCCAG
TGCTTTGATT TCATCCCTCG CTGGCGTTTT GATGATGTCA TGGTGAGTTA TGCGACACCT
GGCGGAGGTG TTGGACCGCA TATTGATCTC TATGATGTGT TTATCTGCCA AGGCTCTGGT
CGTCGTCGCT GGCGTGTGGG TGACAGAGGA GAGCATAGAG AGTTTGCTGC TCACCCAGCT
CTGCTTCACA CTGAAGCATT TGAGCCTATT ATTGATGTGG AATTGCTACC AGGAGATATT
TTGTACCTGC CACCTGGTTA CCCTCATGAT GGGGTGACGC TTGAAGAGTC GATGAGCTTC
TCTGTTGGCT ATCGTACAGC TTCGGCAAAA GATATGGTAA GTGCATTGGC TGACCACTTA
ATTGATAATG AACTGGGTTG TGAACAGATT GAAGATCCAG ACAGAGTAAT CAGTTTGCAA
AGTGGACGCG TAGATGAAAG CGACTTAGCA AGAATTAAGG CGCAACTTCT GGCCAAATTA
GATGATAGAT TGATCAGTGA ATTCTCGGGG AGATACCTGA CAGCATCTAA GTGTGAGTTA
GATCTGCCTG AGCAGAGTTT AGGTTTTCAA TCGACAGATA TTTTGGAGAT GTTAAAAGCG
CAGACACTTA TCCGCCTTGG TGGCTTGCGA GTGCTTTATT TCGATGCCTC TGTTAAGCAA
GGTCTGTTTT ACATTAATGG TGAGGAGTAT CAGTTATCAT CAGCGCTCAG TGACGCTATC
CCGTTTTTAT GTGATCAGCA GCAATTGAGC TATTCGTGTA TAGCTCCTTG GCTAGATAGC
CGTGAGTTCA TCGAGCAACT GACTTTGTGG GTCAACGCGG GTTTCTGGTA TTTTGAAGAG
GATTAA
|
|---|
| Protein sequence | MMQLELGELT PEQFLKEYWQ KKPLVIRKGF SNFRDLLSPE EMAGLACDEM VESRRIYKEQ
GEWQAEFGPF DSYEHLGESG WTLVVQALNN WLPGAEQLIQ CFDFIPRWRF DDVMVSYATP
GGGVGPHIDL YDVFICQGSG RRRWRVGDRG EHREFAAHPA LLHTEAFEPI IDVELLPGDI
LYLPPGYPHD GVTLEESMSF SVGYRTASAK DMVSALADHL IDNELGCEQI EDPDRVISLQ
SGRVDESDLA RIKAQLLAKL DDRLISEFSG RYLTASKCEL DLPEQSLGFQ STDILEMLKA
QTLIRLGGLR VLYFDASVKQ GLFYINGEEY QLSSALSDAI PFLCDQQQLS YSCIAPWLDS
REFIEQLTLW VNAGFWYFEE D
|
|---|
| |