| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2186 |
|---|
| Symbol | |
|---|
| ID | 6116456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2680393 |
|---|
| End bp | 2681223 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641633694 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001760563 |
|---|
| Protein GI | 170726537 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000605842 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0104455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA CCTCCTATAA AAACAGATTA ACCATCGAAG ACAAAACATT AAGTTATATC
GATATTGGTA CAGGGCCTGT GCTGCTTCTT GGCCACAGCT ACCTTTGGGA TGCTCAGATG
TGGGCCCCTC AGATTGAAGC ATTAAGTCAA CAATATCGCT GTATCGTTCC TGATCTTTGG
GGACACGGTG ACTCAGACCC TCTCCCAGAT AACTGTCGCT CACTGCAGCA TATCGCCGAT
CATATGTTAA AGCTGATGGA TCAACTCGAC ATTCAAGAGT TCTCTATCAT AGGTTTGTCT
GTTGGGGGCA TGTGGGGGGC AGAACTTGCA CTGAAAGTAC CTAAGCGAGT AAAGTCGCTC
GCAATGCTCG GATGTTTCGT CGGCTTTGAA CCAGAGGTAG CGCGAGCCAA ATATTACACT
ATGCTCGATG CCATTAAAGA AGCTCAAGCA GTACCCGAAG CGTTAGTCGA GCAGATCGCT
CCTCTCTTTT TCGCTCATAA CACAGAGGCT AATAACCCTG AGCTTTTTAA CGGCTTTAAA
GAGTCCTTAA GACAGGTAAA GCCTGAACAG ATTGATACCA TCTGCCGTTT AGGAAAAATC
ATCTTTGGCA GACGAGATAC CCTAGAGGAG ATCGAATCTT TAAATGCCCC CTGTTTAATC
ATGACAGGTG TCGAGGATAC CGTTCGCCCC GTACTTGAGG GATACTTGAT GCATGATGCC
ATCAAGGGCA GTGAATTTAT CCATATCCCA CAAGCAGGGC ATATCTCCAC TCTGGAACAG
GCTGAGTTTG TTAATCAACA TCTCTGTGCT TTCCTAAGTC AGCACAATTA G
|
|---|
| Protein sequence | MKFTSYKNRL TIEDKTLSYI DIGTGPVLLL GHSYLWDAQM WAPQIEALSQ QYRCIVPDLW
GHGDSDPLPD NCRSLQHIAD HMLKLMDQLD IQEFSIIGLS VGGMWGAELA LKVPKRVKSL
AMLGCFVGFE PEVARAKYYT MLDAIKEAQA VPEALVEQIA PLFFAHNTEA NNPELFNGFK
ESLRQVKPEQ IDTICRLGKI IFGRRDTLEE IESLNAPCLI MTGVEDTVRP VLEGYLMHDA
IKGSEFIHIP QAGHISTLEQ AEFVNQHLCA FLSQHN
|
|---|
| |