| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2179 |
|---|
| Symbol | |
|---|
| ID | 6116449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2671657 |
|---|
| End bp | 2672742 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633687 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001760556 |
|---|
| Protein GI | 170726530 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000248395 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.140593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TAATAATAAC GTTAATCCTA ATCTCCCTTG CCTTTCTGGC TTATCAAAAG
CTATACCCAG CTAATGAAAC CTTAGTGAAA AAGCCAAGAC CCATCGCCAA TGTGGTGGTT
GCCAAGGCCG CAATTGAGCC GATAAGGGAT GAGGTCGAGG CGCTAGGTAC CAGCAAAGCA
AATGAATCCG TGACAGTGAC GCCTAAGGTG ACTGAGGTGG CAACAGCGCT CTTTTTTGAT
GATGGTGACG TGGTTAAAAA GGGGCAGCAG TTAGTCCAGC TTCAAGATAG AGAGCAGCTT
GCACGTGTTA CAGCAGCTAA AGTGCGTGTA AATGAGCATA TGCGCGAGCT AGATAGAATA
CGCTCTCTTG TGACCAACCA AACTATCGCT GAGTTGGAGC GAGACAGATT ACAGACTTTA
ATTGATACTG CAAAAGCTGA GTTGGCTCAG GCAAGTTCAG CCCTCAATGA CAGGCAGATC
AGTGCACCTT TTGAGGGGCG CTTAGGTCTG CGACAGATAA GTGTTGGTAG CTTACTCTCT
CCAGGAACAG TGATCACAAC ATTGGATGAT ATCTCAGTGA TTAAGCTGGA TTTCTCTGTT
CCTGAGCGTT TTTTGCCTTC ACTTGCTGTC GGTAAAAATG TTGAAGCCAC CGCCATGGCG
TTTCCCGATG AACTGTTTAG CGGGAAAGTT ATCTCTATCG ATAGCCGCGT TAATCCAACC
ACACGAGCAG TGATTGTGCG TGCTGAACTT CCTAATCCTA AACACAGACT ACTGCCTGGT
ATGTTGATGA AGGTTAAATT GATTAAAGAG AGCAGAGATG CACTCATTTT GCCTGAGTCA
GCCATTATTC CTATACAGGA TAGACACTAT GTTTATTTAG TCGATGGGGA TGACAAGGTT
GTGAAAAGAG AGGTGCACCT AGGATTACGT AAACGCGGCT GGGTAGAAAT TCTTGATGGG
ATCAACTTAG GTGAGCAGGT GGTGATCCGC GGGATATTGA AAGTGAGACC CGGTGATAAA
GTTAAAGTCC AATTCAGCGA AAAATTTAGC TTTTTAGAAA ATGCTAAGGT TGGGCCAACT
GTATGA
|
|---|
| Protein sequence | MKKIIITLIL ISLAFLAYQK LYPANETLVK KPRPIANVVV AKAAIEPIRD EVEALGTSKA
NESVTVTPKV TEVATALFFD DGDVVKKGQQ LVQLQDREQL ARVTAAKVRV NEHMRELDRI
RSLVTNQTIA ELERDRLQTL IDTAKAELAQ ASSALNDRQI SAPFEGRLGL RQISVGSLLS
PGTVITTLDD ISVIKLDFSV PERFLPSLAV GKNVEATAMA FPDELFSGKV ISIDSRVNPT
TRAVIVRAEL PNPKHRLLPG MLMKVKLIKE SRDALILPES AIIPIQDRHY VYLVDGDDKV
VKREVHLGLR KRGWVEILDG INLGEQVVIR GILKVRPGDK VKVQFSEKFS FLENAKVGPT
V
|
|---|
| |