Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2143 |
Symbol | rlmL |
ID | 6116406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2628811 |
End bp | 2630946 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641633646 |
Product | 23S rRNA m(2)G2445 methyltransferase |
Protein accession | YP_001760522 |
Protein GI | 170726496 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase [COG1092] Predicted SAM-dependent methyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAATT TCTTTGCTGC GGCTCCTAGG GGCTATGAAT ATGCGTTATC ACTTGAGTTA GCGGACCTCG GTGCGTCTGA CATTAAAGAG AGTGTTGCTG GTGTTTACTT TTCAGCTTCG CTCGAGTTGG GATATCGAAT TACCCTTTGG TCAAGAATTG CTAGTCGGAT AATTTTTGTT ATCCATAAAG GACCATGTGA ATCGCCTGAG CAGCTTTACA ATGCCGCATA TGGCATTGAT TGGCAGATGG AGTTCAACCA CCGCAGCACA TTTAGTATCG ATTTTCACGG TATGGGTGGC TTTATTAATA ACACCATGTT TGGTGCACTT AAAATTAAGG ATGCCATCGT TGATCGCTTC CGTGATGATG ATTGCCCAAG ACCAGACGTA GCTCGTGTCG ATGCGGATTT TAGAATTGAT GCACACTATC GCCGCGGTCA AATCACCATT GGTTTGAACT TTTCAGGCCC TGCACTGCAC AAACGTGGTT ACCGTGACAT AACGGGTGAA GCACCACTTA AAGAAAACCT CGCCGCTAAT ATGTTGATGC GAAGTGGATG GCAGAAAAAT CCAGTTTCCT TGTTAGATCC ATTCTGCGGT AGTGGTACGA TTTTAATTGA AGCCGCCATG ATGGCCTGCG ATATGGCCCC TGGTCTTCAT CGGGAGCGTT TCGGTTTTGA ACATTGGCTG AGACACAATG ATAAATACTG GCAAGAGCTG CTGGACGAAG CAAAGGCGAG GGCATCGATA GGTATTACAC GCTGTAAAAC TAAATTTTAT GGCTCGGATA TCGACTCACG TATTGTGGCA CTTGCAAAAA AGAATGCCGC AAATGCTGGT GTCTTGGAGT TAATCGATTT TAGTGTTACT AACGCATTAA ACGTGAAAGT ACCTGAAGAG ACTGGCTATC TCATTACCAA TCCACCTTAT GGTGAACGAT TAGGCACAGT GACAGCATTA CTGCAGTTGT ATTATCAGCT TGGTGATAAG TTTAAAGCTG AATTTGGTGG CTGGAATCTT GCTGTTTTGA ACAGCGATGT AGAGCTATTG TCTGCGTTAA AGTTAAAAGC AGATAAACAG ATGAAGATGA ATAATGGTGC GCTAGAGTGC GCCTTTAATC TCTATACTGT TCATGCTACA AATACGCGAC GTGTTGATCC AAGTAATATC AATCGTGAAG GTGATGTGAG TGATATTGCA GTGCCTTTTG TGAACCGGGT AAAAAAGAAT ATTAAGCAGC TACAAAAATG GGCTAAGAAA GAGGGGATTG ATAGCTATCG TATCTATGAT GCTGATCTAC CCGATTACAA AGTTGCCATT GATAAGTACT TAGATTACGT TGTGATCCAA GAATATACTG CACCTGTCGA TATCCCTGAG TCTGTCACTA AACGTCGATT AACAGATGTA CTTATCACTC TACCGGGGGC GATCGGTATC GATCCCAATA ATATTATTTT AAAAACCCGT GAGAAGCAGA AAGGCACTAA CCAGTACGAG AAGATCCAAG CAAACAAGCT TGAGCTTATT ACCACTGAGT ATGGCGCTAA ATTTAAGTTA AACCTTAAAG AGTATTTAGA TACAGGTCTT TTCTTAGATC ACCGCCTAAC GCGTAAATTA GTGGGTGAAA AATCCAAAGA TCGTGATGTA TTGAACCTGT TTGCATACAC AGGAACAGCC TCTGTCCATG CCGCTCTAGG TGGGGCTAAG TCGGTAAAGA CTGTCGACAT GTCTAATACC TATACAAACT GGGCTAAAGA AAACTTTGCT TTAAACGGTT TAAATGATGA TAAGTATCAG TTTGTTCAAG CTAACTGTAT GCAGTGGATT AAAACCACTC ACGATAAGTT TGACCTGATT TTTATCGATC CACCGACATT CTCTAACTCT AAGAGAATGG AGGACTCTTT TGATGTGCTA CGTGATCATG TGCCTCTTTT ATCGAGTCTA ATTAAGCTAT TAAACCCTAA TGGTGAGATT ATTTTCTCAA ATAATAAGCG CAAGTTTAAG ATGGAAATCG AAGCATTAGA AGCCTTGAAC TTTACCGTTA AGAACATAGA TAACCAGACA CTTCCTCTGG ACTTTAAACG TAACCCGCAG ATCCACAATA CCTGGTTGCT TACCCATGGC GGATAG
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Protein sequence | MLNFFAAAPR GYEYALSLEL ADLGASDIKE SVAGVYFSAS LELGYRITLW SRIASRIIFV IHKGPCESPE QLYNAAYGID WQMEFNHRST FSIDFHGMGG FINNTMFGAL KIKDAIVDRF RDDDCPRPDV ARVDADFRID AHYRRGQITI GLNFSGPALH KRGYRDITGE APLKENLAAN MLMRSGWQKN PVSLLDPFCG SGTILIEAAM MACDMAPGLH RERFGFEHWL RHNDKYWQEL LDEAKARASI GITRCKTKFY GSDIDSRIVA LAKKNAANAG VLELIDFSVT NALNVKVPEE TGYLITNPPY GERLGTVTAL LQLYYQLGDK FKAEFGGWNL AVLNSDVELL SALKLKADKQ MKMNNGALEC AFNLYTVHAT NTRRVDPSNI NREGDVSDIA VPFVNRVKKN IKQLQKWAKK EGIDSYRIYD ADLPDYKVAI DKYLDYVVIQ EYTAPVDIPE SVTKRRLTDV LITLPGAIGI DPNNIILKTR EKQKGTNQYE KIQANKLELI TTEYGAKFKL NLKEYLDTGL FLDHRLTRKL VGEKSKDRDV LNLFAYTGTA SVHAALGGAK SVKTVDMSNT YTNWAKENFA LNGLNDDKYQ FVQANCMQWI KTTHDKFDLI FIDPPTFSNS KRMEDSFDVL RDHVPLLSSL IKLLNPNGEI IFSNNKRKFK MEIEALEALN FTVKNIDNQT LPLDFKRNPQ IHNTWLLTHG G
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