Gene Swoo_2111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2111 
Symbol 
ID6116374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2587163 
End bp2588272 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content45% 
IMG OID641633614 
Productribonuclease D 
Protein accessionYP_001760490 
Protein GI170726464 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000446325 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.381908 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTAGCGT TTCAATATAT AGATGATGAT GCAAGTTTAG CTAAGCTTGT TTCTCAGTAC 
AGAGAGAGTC AGTTACTGGT ATTGGACACT GAATTTGTTC GTACCCGCAC TTTTTATGCT
CGCCTTGGCT TAATACAAGC TTATGATGGT AAAACCCTGG CCTTGATTGA CCCTGTGGCA
GTCAGTGATC TTTCAGGTTT CTGGAGCTTG TTGACAGAGC CTAGCATCAC TACGATTTTA
CACTCATGCA GTGAAGATTT AGAGGTCTTT GCTCGCAACG GTCAGTGTCA GCCAGTCAAG
CTGTTCGATA GCCAGATTGC CGCAGCATTA TGTGGTTTCG GCCATGGCTT GGGCTATGCA
AAGCTGGTTG AGCAAACCTT GAACATCCCA CTTGATAAAG GCGAATCTCG TACCGACTGG
ATGAAACGTC CCTTAAGTGA AGCGCAGCTG AACTATGCGG CTAACGATGT TTACTACCTT
TATCAGCTCT ATCCACAACT TGTAGAGAAG CTTGAGGAGC AAAATAGACT GGGTTGGGTA
TTCGAAGAGG GTGAGCGTAT GACCCAAGGT CGTCTGTCTC CACCGGATCT TGAGCTGGCT
TATTTAAGGG TTAAAAACGC ATTTCAACTG AGTCCTAAAC AGTTAGCATA TTTAAAAGTA
TTAGCAAAAT GGCGCTTATC AAAAGCCCTG TCACGGGATC TTGCTGTAGG TTTTGTTGTT
AAAGATCACG GCTTAATTGG CTTAGCGAAA AAGCAGCCTA AAAATAGCAG TGAACTCTAT
AAGATGATTG AGCTGACAGA GCAGGAGAAG CGTGTTCATG GCAAAGATCT TATTAGGTTA
TTAGCCACGG CGGATCTGGA TAACCTGCCC GACGCTATCG ATGTATTGGC ATTGAAAACA
GGCTATAAGA GTTCGTTTAA AACTATTAAG CAGTGTTTAA GTGAGCTCAG TGAACGCCAT
GAAGTACCTA TTGAGCTCTT GGGTTCTAAG CGGCATATTC ATGAGTATCT TGAGTGGTTG
TGGGCAGGTA AGGTTGGAGA TAAACCTCTG CTGTTATCTG GCTGGCGTGA AACCTTGGTT
TCAGCACCGC TGTCGGCACT GTCTCTCTAA
 
Protein sequence
MLAFQYIDDD ASLAKLVSQY RESQLLVLDT EFVRTRTFYA RLGLIQAYDG KTLALIDPVA 
VSDLSGFWSL LTEPSITTIL HSCSEDLEVF ARNGQCQPVK LFDSQIAAAL CGFGHGLGYA
KLVEQTLNIP LDKGESRTDW MKRPLSEAQL NYAANDVYYL YQLYPQLVEK LEEQNRLGWV
FEEGERMTQG RLSPPDLELA YLRVKNAFQL SPKQLAYLKV LAKWRLSKAL SRDLAVGFVV
KDHGLIGLAK KQPKNSSELY KMIELTEQEK RVHGKDLIRL LATADLDNLP DAIDVLALKT
GYKSSFKTIK QCLSELSERH EVPIELLGSK RHIHEYLEWL WAGKVGDKPL LLSGWRETLV
SAPLSALSL