Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2111 |
Symbol | |
ID | 6116374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2587163 |
End bp | 2588272 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633614 |
Product | ribonuclease D |
Protein accession | YP_001760490 |
Protein GI | 170726464 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000446325 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.381908 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTAGCGT TTCAATATAT AGATGATGAT GCAAGTTTAG CTAAGCTTGT TTCTCAGTAC AGAGAGAGTC AGTTACTGGT ATTGGACACT GAATTTGTTC GTACCCGCAC TTTTTATGCT CGCCTTGGCT TAATACAAGC TTATGATGGT AAAACCCTGG CCTTGATTGA CCCTGTGGCA GTCAGTGATC TTTCAGGTTT CTGGAGCTTG TTGACAGAGC CTAGCATCAC TACGATTTTA CACTCATGCA GTGAAGATTT AGAGGTCTTT GCTCGCAACG GTCAGTGTCA GCCAGTCAAG CTGTTCGATA GCCAGATTGC CGCAGCATTA TGTGGTTTCG GCCATGGCTT GGGCTATGCA AAGCTGGTTG AGCAAACCTT GAACATCCCA CTTGATAAAG GCGAATCTCG TACCGACTGG ATGAAACGTC CCTTAAGTGA AGCGCAGCTG AACTATGCGG CTAACGATGT TTACTACCTT TATCAGCTCT ATCCACAACT TGTAGAGAAG CTTGAGGAGC AAAATAGACT GGGTTGGGTA TTCGAAGAGG GTGAGCGTAT GACCCAAGGT CGTCTGTCTC CACCGGATCT TGAGCTGGCT TATTTAAGGG TTAAAAACGC ATTTCAACTG AGTCCTAAAC AGTTAGCATA TTTAAAAGTA TTAGCAAAAT GGCGCTTATC AAAAGCCCTG TCACGGGATC TTGCTGTAGG TTTTGTTGTT AAAGATCACG GCTTAATTGG CTTAGCGAAA AAGCAGCCTA AAAATAGCAG TGAACTCTAT AAGATGATTG AGCTGACAGA GCAGGAGAAG CGTGTTCATG GCAAAGATCT TATTAGGTTA TTAGCCACGG CGGATCTGGA TAACCTGCCC GACGCTATCG ATGTATTGGC ATTGAAAACA GGCTATAAGA GTTCGTTTAA AACTATTAAG CAGTGTTTAA GTGAGCTCAG TGAACGCCAT GAAGTACCTA TTGAGCTCTT GGGTTCTAAG CGGCATATTC ATGAGTATCT TGAGTGGTTG TGGGCAGGTA AGGTTGGAGA TAAACCTCTG CTGTTATCTG GCTGGCGTGA AACCTTGGTT TCAGCACCGC TGTCGGCACT GTCTCTCTAA
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Protein sequence | MLAFQYIDDD ASLAKLVSQY RESQLLVLDT EFVRTRTFYA RLGLIQAYDG KTLALIDPVA VSDLSGFWSL LTEPSITTIL HSCSEDLEVF ARNGQCQPVK LFDSQIAAAL CGFGHGLGYA KLVEQTLNIP LDKGESRTDW MKRPLSEAQL NYAANDVYYL YQLYPQLVEK LEEQNRLGWV FEEGERMTQG RLSPPDLELA YLRVKNAFQL SPKQLAYLKV LAKWRLSKAL SRDLAVGFVV KDHGLIGLAK KQPKNSSELY KMIELTEQEK RVHGKDLIRL LATADLDNLP DAIDVLALKT GYKSSFKTIK QCLSELSERH EVPIELLGSK RHIHEYLEWL WAGKVGDKPL LLSGWRETLV SAPLSALSL
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