| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2100 |
|---|
| Symbol | |
|---|
| ID | 6116363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2574161 |
|---|
| End bp | 2575621 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641633603 |
|---|
| Product | ethanolamine transproter |
|---|
| Protein accession | YP_001760479 |
|---|
| Protein GI | 170726453 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0833] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00908] ethanolamine permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00738274 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.254622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAG AATCAAAGCA ACAAAGTGCA CCTAAAACAA AAAATAAAAG CATCGAGTAT
GAAGCCGTTT CCGATGAGTA CATGAGTCAA CGTCAGCTTA AAAAGGGGGT AGCTGGTTGG
GTATTACTGG CGAGTTTGGG GATATCTTAT GTGATCTCCG GTGATTTTGC GGGGTGGAAT
TTCGGCCTCG AACTTGGCGG CTTTGGCGGT ATGTTAATCG CAACATTGGT GATGGGATTA
ATGTATATCT GCTTAGTATT AAGCTTGGCG GAGATGTCAT CCTCACTGCC AACAGCGGGG
GGCGGCTACA GCTTTGCTCG CCGTGCTATG GGTCCCTGGG GAGGCTTTTT AACGGGAACG
GCTATTTTAC TTGAATACGC CATTGCTCCA GCTGCCATCG CCATCTTTAT TGGCGGGTAT
GTGAATGAAC TTGTTGGGAT AGATGGCCCT ATCGTGTATG CCGCTTTCTA CTTAGTTTTT
GTTGGTCTAC ACCTTTGGGG GGCGGGGGAA GCATTAAGAA TTATGATGGG GATAACCTTG
CTAGCGGTTA TCGCCATCGG TGTTTTTATG GTGGGGATGG TGCCTCATTT TGATCCCGCG
AACCTGTTCG ATATCGCAGC TAATCCAGAC GTTGCAGGCT CAAGTAGTTT TCTACCTGAA
GGTTACATGG GGATCTGGGC TGCATTGCCT TTTGCTATGT GGCTGTTTCT TGCAGTAGAG
GGGGTGCCAT TGGCGGCTGA GGAAGCGACA GATCCAGCGA AAGATATGCC AAAAGGAATT
ATCGCCTCCA TGTTGGTATT GATTGTCTTT GCGGCCGCAG TGCTGCTATT GGTTCCTGGT
GGAGCTGGTG CTGAGGCGAT GAAAACCCAC GGTGCACCAC TAGTTGGCGC ACTGCAGTCT
GTTTACGGCT TAGACTCTTT AGCTGCTAAG TTTGTTAATT TAGTCGGTCT GTTTGGTTTA
ATTGCCAGTT TCTTCTCCAT TATCTATGCC TACTCTCGTC AAGTTTTTGC TCTTTCTCGA
GCGGGATACC TACCACGTTT TCTCTCCTTG TCTGGTCAGC GAAAAGTACC TGTTTGGGCG
TTAATCGTAC CGGGAATATT AGGCTTTCTT TTGTCGCTAA CAGGCGAAGG GGATTTGATG
ATCACCATGG CGGTATTTGG GGCGACGATC TCCTATGCCA TGATGAGTCT GTCACATATT
TTACTTCGCA AGAAAGAGCC CCAGCTTGAA CGCCCCTATA AAACACCTGG TGGTGTGCTG
ACATCTTCTA TCGCCTTAAT TCTTTCACTG GTCGCTCTGG CATCAACCTT CGTAGTGAGC
CTTCAAGCGG CCATGTGGTC TGCACTTTTC TATCTGATTA TGGTGACCTA CTTTGTGCTA
TATAGCCGCC ATAGATTAGT TGCTTCAGCG CCAGAGGAGG AGTTTGACAT GATAGCGTCT
GCGGAGTCAG AGCTTAATTA A
|
|---|
| Protein sequence | MSQESKQQSA PKTKNKSIEY EAVSDEYMSQ RQLKKGVAGW VLLASLGISY VISGDFAGWN
FGLELGGFGG MLIATLVMGL MYICLVLSLA EMSSSLPTAG GGYSFARRAM GPWGGFLTGT
AILLEYAIAP AAIAIFIGGY VNELVGIDGP IVYAAFYLVF VGLHLWGAGE ALRIMMGITL
LAVIAIGVFM VGMVPHFDPA NLFDIAANPD VAGSSSFLPE GYMGIWAALP FAMWLFLAVE
GVPLAAEEAT DPAKDMPKGI IASMLVLIVF AAAVLLLVPG GAGAEAMKTH GAPLVGALQS
VYGLDSLAAK FVNLVGLFGL IASFFSIIYA YSRQVFALSR AGYLPRFLSL SGQRKVPVWA
LIVPGILGFL LSLTGEGDLM ITMAVFGATI SYAMMSLSHI LLRKKEPQLE RPYKTPGGVL
TSSIALILSL VALASTFVVS LQAAMWSALF YLIMVTYFVL YSRHRLVASA PEEEFDMIAS
AESELN
|
|---|
| |