| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2065 |
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| Symbol | |
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| ID | 6116328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2530873 |
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| End bp | 2533491 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633568 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001760444 |
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| Protein GI | 170726418 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.768773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAACT CTAGTCCAAC TCACTCCCCC ATAAAGGTCC TACGCTGGCG CGACAGTTTA
CCGATCAAGT TCTCCTTTAT TCAATTTATC ATCGCATCAC TCATCATCAT CTCCAGTGTT
TGGCTGATTT TTACTATTGA GAAAAGCCAT CATCTAGAAA CTCAGATAGT ACTCAGCCAA
AATCAAGGCT TAGCCTTTGT TGCAACCTTA GAGCAGACCA CCACGAAAAT TGAGAGTTTG
GCTAGCTCTA TCGCCTCACT CGGTCAGCTC TACAGTAACA ATACTCAAGT GTTACAGGAC
TCAATACCAG CTTTACTTAA TACTGACGGT AAACATCAGC TTATCTCTGG CGGCGGACTC
TGGCCAGAGC CTGCAGCTTT CAATCAAGAA AAGGAGAGAG ACAGTTTTTT TTGGTCCAGA
AACAAAAGCT TAGAGTTACA ACAAATCGAG GGGTACAATA GTCAAATTGG CCCAGATTAT
CATCAAGAGA GTTGGTACAA ACCCATACGT TTTTACCCCC AAAATACCGT GTTGTGGTCG
CAAGCCTATA TCGATACCTA CACCAAAGAG ACCATGTTAA CCGCCTCGGT TCCTATGTGG
TCAGAACATC AATTTCTTGG TGTTGCGACG ATAGATATCA CCCTTTCAGG TTTAGCTCAC
TTCTTTAATG AAGCAGTCAA TGAGAAAACT GAAAATAAAA GCTATATTTT TGCTCTAGAT
CATCTCAATA AGGTTATCGC CTTCCCCGAT GAGCATCAAT CTCCACAACT TATTGAGCCC
AACTCACTAT TTAAACCACT CTCCCAATTG GCTAAAGAGA AGCAAAACTT GGCAATCATC
AACCAGAAAC TACTTGAGGT CGATGAGCAG TTAATTCAGC GCGCCCAACA ACACCCAGCG
TTTAGTCAGG AGCAACTAAG CTCTCTATTA CAGAGCACTC CGGTGAACCA AAGAGATAAG
CTTGCAGCCC TGATAAACCT AAACGCCAGT AAAACTCTCA ATACTGCAGA GCTTATCACC
TCATTCAAGC TCAGCCCAAA CGAGCAGAGT AATCAAGCGT CATTAGTATC TATCTTCTTG
ATGCCCAGTA CCTACTGGAA AATCATTTTA GTCACCCCAC TGGATTCGAT TAATGAGGAG
GCCAATAATA TTGCAGCAAG GATTGGTTTC TATCTGGTTA TAATGCAGCT TTTCGGCCTG
CTATTACTCT TTTTGTTGCA ACACAGACTC TTTATTCGCC CCATATCAAG TATGGTTTTT
GCCTTAAAGG AGAATCAAGT TGCTAAACTC GAACTGGAAG CGGCTAACCG CAAAGATGAA
GTTGGACAAC TAGCTCAAGC ATTTGTGTTT CGCAATCATC AACTTGAAGT CGCATTTGCC
AGCTTAGATG CCAGTAACTT AGCCTTAGAG GAACAACTTG CCGTGCAGCA ACTGGCTCAA
AATGAGCTGA AATTACGCAA GACTCAACTT AATTCATTAC TCAATGCTTC TCATAACCTA
ATATTTGTTA AAGATATTCA AGGCTCATAC ACTTTAGTCA ATGACAGATT TTGTGAAGTT
ATTGGCATTG AAAGACATGG AATTTTAGGC AAGAAAGATC TGCAGCTTTT TCCTCCCCAC
ATTGCAGAGT TGATACTGAA ACACGATAAA ATTACTTTAG ACACGCAGGA GCCCCAGAGC
TTTGAACAAG CCTTCCCCTC CTCCCATGGT GAGACCCTCT ATCAGATAAC AAAATTTCCC
ATTGTTAATG ATGAAGGCGA GACCATCTCC ATGGGTAATA TGGCATTCGA CATCAGCTCT
CAAAAAGTTA TCACCCAGGA GCTGCACGAC AATAACCTGC AATTGACTAA TGAGATCTCA
GAATTAAGTG TGCAGATTAA GCAAGCTCAA CAGCAAATAG CTCTACAAAA AGAAGTTATT
AACCAAATAG AGCATGAAAA TTTAGGCGCT CAGCAGCAAA GACACATGGA CTCCAGTGTT
TATCTACTAT TTCCAGCAAT GTTCTCAGCC CTTATTAAGA GGCAGATGAT AGAGCAAGAT
CATCTCGTGG CGAAGATGTG TCAAAATGAA CAGGAAGCGG AAACCAAACT CGATACTATG
CTAGCGCTGC TGACCCACAA TACTGACACA TTAAGGCATT TTCAGCAGAT ACTTTTGAGC
AAAAACGAAG CTATCAAAGC GATTAATCTA TCTCAGTTTC TCAGTCATTT CCTTGCAGTG
TTTGAGCCTA AATTAACAGA GGAGAATATT AGCCTTGAGC TAGAGTGCGA TGAGCATATT
ATCGTTAATC TTCCCTCTTG GGATCTGCTA CTCCTGCTCT ACTCTATTGT TAATAACAGT
CTTAGCCATG CTTTTATTGA TAAGCGCTCC GATTGCAACA TCATCATAAG AGCGACACAG
GAGAGCGAAG CGATCACCAT TATTGTCGAA GATAACGGCA TAGGAGTAAG CCCAGAGAAA
CTTGCTCAAC TCAATGAGCA ACTGCTTTCA AATAACAGTC AACGCAGTCT GTCGAGACTT
AATGGATGGT TAAAAGCGCA ATTTAGTGGT CAGATCATCC TGGAAGCTAA AAGTAATCAG
TATATGCGCA CTATCTGTCA CTTCGCTAAA AAGACCTAA
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| Protein sequence | MGNSSPTHSP IKVLRWRDSL PIKFSFIQFI IASLIIISSV WLIFTIEKSH HLETQIVLSQ
NQGLAFVATL EQTTTKIESL ASSIASLGQL YSNNTQVLQD SIPALLNTDG KHQLISGGGL
WPEPAAFNQE KERDSFFWSR NKSLELQQIE GYNSQIGPDY HQESWYKPIR FYPQNTVLWS
QAYIDTYTKE TMLTASVPMW SEHQFLGVAT IDITLSGLAH FFNEAVNEKT ENKSYIFALD
HLNKVIAFPD EHQSPQLIEP NSLFKPLSQL AKEKQNLAII NQKLLEVDEQ LIQRAQQHPA
FSQEQLSSLL QSTPVNQRDK LAALINLNAS KTLNTAELIT SFKLSPNEQS NQASLVSIFL
MPSTYWKIIL VTPLDSINEE ANNIAARIGF YLVIMQLFGL LLLFLLQHRL FIRPISSMVF
ALKENQVAKL ELEAANRKDE VGQLAQAFVF RNHQLEVAFA SLDASNLALE EQLAVQQLAQ
NELKLRKTQL NSLLNASHNL IFVKDIQGSY TLVNDRFCEV IGIERHGILG KKDLQLFPPH
IAELILKHDK ITLDTQEPQS FEQAFPSSHG ETLYQITKFP IVNDEGETIS MGNMAFDISS
QKVITQELHD NNLQLTNEIS ELSVQIKQAQ QQIALQKEVI NQIEHENLGA QQQRHMDSSV
YLLFPAMFSA LIKRQMIEQD HLVAKMCQNE QEAETKLDTM LALLTHNTDT LRHFQQILLS
KNEAIKAINL SQFLSHFLAV FEPKLTEENI SLELECDEHI IVNLPSWDLL LLLYSIVNNS
LSHAFIDKRS DCNIIIRATQ ESEAITIIVE DNGIGVSPEK LAQLNEQLLS NNSQRSLSRL
NGWLKAQFSG QIILEAKSNQ YMRTICHFAK KT
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