Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2057 |
Symbol | |
ID | 6116320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2522801 |
End bp | 2524714 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641633560 |
Product | arginine decarboxylase |
Protein accession | YP_001760436 |
Protein GI | 170726410 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.126213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.137004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAATT GGTCTATTAA TGATGCCCGC ACAGGGTATA ACGTTAATTA TTGGAGTCAG GGACTCTACG GCATCAGCGA TGAAGGTGAA GCAACTGTAT CACCAGATCC AACTCGACCT GAGTGCAGTA TAGGGCTCAA CGAACTGGCA AAAGATATGG TTAAGTCAGG GGTTAACCTG CCTGTGCTGG TACGTTTCCC ACAGATATTA CACCACAGGG TGAATAGTCT GTGCCAAGCA TTCAACCAAG CGATACAGAA GTATCAATAT CAAGCCGACT ACCTGTTAGT TTACCCGATT AAAGTCAATC AGCAGCAAAC GGTTGTTGAG GAGATCTTGG CCAGTCAGGT TGAGAAAGAG GTGCCTCAAT TAGGATTAGA GGCGGGCAGT AAGCCTGAGC TAATGGCTGT ATTGGCCATG GCCCAAAAAG CCAGTTCAGT GATCATCTGT AACGGTTATA AAGATATCGA ATATATCCGT TTGGCATTGA TCGGTGAAAA ACTGGGTCAT AAAGTCTATA TCGTGCTCGA GAAGTTATCT GAGTTAAAAA CGGTATTAGA GGAATCAAAA AAGCTGGGCG TGACACCACG TCTGGGTTTA CGCGTACGCC TTGCGTTTCA AGGTAAAGGA AAGTGGCAAG CCAGTGGTGG TGAGAAGTCT AAATTTGGCT TGTCAGCCTC TCAGGTATTG ACGGTAATTG AGTCGCTTAA GAGTGAAGAG ATGCTTGATT CACTTCAGTT GCTGCATTTC CATTTAGGCT CTCAAATTGC CAATATTCGC GATATTCGCC AGGGCGTGAG TGAAGCGGGT CGTTTTTACT GTGAGCTGCA AAAGCTCGGC GCGAACGTAA AGTGTTTTGA TGTCGGTGGT GGCTTAGCTG TCGATTATGA TGGCACCCGT AGCCAGAGCT CAAGTTCCAT GAATTACGGC TTAACGGAAT ATGCGAACAA TATCGTTAGT GTCTTGACCG ATATCTGTAA TGAGTATGAG CAGCCGATGC CGAGGATTAT CTCAGAATCA GGCTGCTATT TGACTGCGCA TCATGCAGTG TTGATAACAG ATGTGATTGG TACTGAAGCT TATAAGCCTG AAGATATCCA GCCGCCAGCT GAAGATGCAC CTCAGTTGCT GCATAACATG TGGCACTCTT GGAATGAGAT CAGTGGCAGA GCAGATCAAC GAGCATTGAT TGAGATCTAC CATGACTGTC AGAGCGATCT GACTGAGGTA CACTCTCTGT TTGCTTTAGG CCAGCTATCA CTGACTGACA GAGCATGGGC AGAGCAGGTC AACTTAAGGG TTTGTCATGA GCTGCAAGGC GTCATGAGCA GTAAGTACCG CTTCCATCGT CCGATCATCG ATGAGTTGAC AGAAAAGTTA GCCGATAAGT TCTTCGTTAA CTTCTCATTG TTCCAATCTC TTCCGGATGC GTGGGGTATC GATCAGGTGT TCCCGATCAT GCCACTTTCT GGTCTAGATA AAGCGCCAGA GCGCCGTGCT GTGATGTTAG ACATCACCTG TGACTCAGAC GGTACTATTG ATCAATATGT TGATGGTCAA GGCATTGAAA CAACACTGCC AGTTCCAGCA TGGAGCGCAG AGAGCCCCTA TTTGATAGGT TTCTTCCTTG TGGGCGCATA TCAAGAGATC TTAGGTGATA TGCATAACCT ATTTGGTGAT ACTAACTCTG CAGTGATCCG TCTTGATGAC GATGGCCGAA CTAATATTGA ATCAGTATTG GCCGGTGATA CCGTTGCAGA TGTGCTTAGG TACGTTAACT TAGATGCTGT GTCATTTATG CGTACCTACG AGGAGCTAGT GAATAAGCAT ATTCAGGAAG ATGAGAGAGC GAATATACTC GAAGAGCTGC AGTTAGGCTT AAAAGGGTAT ACCTATCTTG AAGATTTCTC ATAA
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Protein sequence | MSNWSINDAR TGYNVNYWSQ GLYGISDEGE ATVSPDPTRP ECSIGLNELA KDMVKSGVNL PVLVRFPQIL HHRVNSLCQA FNQAIQKYQY QADYLLVYPI KVNQQQTVVE EILASQVEKE VPQLGLEAGS KPELMAVLAM AQKASSVIIC NGYKDIEYIR LALIGEKLGH KVYIVLEKLS ELKTVLEESK KLGVTPRLGL RVRLAFQGKG KWQASGGEKS KFGLSASQVL TVIESLKSEE MLDSLQLLHF HLGSQIANIR DIRQGVSEAG RFYCELQKLG ANVKCFDVGG GLAVDYDGTR SQSSSSMNYG LTEYANNIVS VLTDICNEYE QPMPRIISES GCYLTAHHAV LITDVIGTEA YKPEDIQPPA EDAPQLLHNM WHSWNEISGR ADQRALIEIY HDCQSDLTEV HSLFALGQLS LTDRAWAEQV NLRVCHELQG VMSSKYRFHR PIIDELTEKL ADKFFVNFSL FQSLPDAWGI DQVFPIMPLS GLDKAPERRA VMLDITCDSD GTIDQYVDGQ GIETTLPVPA WSAESPYLIG FFLVGAYQEI LGDMHNLFGD TNSAVIRLDD DGRTNIESVL AGDTVADVLR YVNLDAVSFM RTYEELVNKH IQEDERANIL EELQLGLKGY TYLEDFS
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