| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2035 |
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| Symbol | |
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| ID | 6116298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2502845 |
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| End bp | 2504251 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633538 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001760414 |
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| Protein GI | 170726388 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.256574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0433379 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGATA TTGAAGAAGC TCTAGCACTA CTTGCAGCCC CCTGTACTGA CGAACGTTTT
TTTCAACGTG CGCTAAAAGC ACTTGCACTT GTAACTCAAT GCCGTTGGGC TGCCTTTGGC
AGGCCATCAG ATGTGGCAGG CAAGGCTGAA GTGGTGGCTT TTTGCGATCT AAAACACACT
GTGCCTGGAT TTGAGTTCGA TTTGGAGGGG TCACCTTGTG AGCTCATTTA CCGACAGAAA
TACCCAGACA CTCACCTACT GTTTGCCAAA GATCTGCAAA CAAAATTTCC AAACTTCCAG
TTGATTAAAG ATCTGGGCGC CAACAGTTAC CAAGCAGAGT TAATTCTAGA TGATGGTGGT
AACCCCATAG GCCATATTTT AGTCATGGAT CCCCTCCCAC AAACAGAGAC AATGAAATCA
AAAGAGTTTT TCAGACTATT GGCTCAAAGA ATTGGGGTTG AATATAAACG TCTACTTATC
TCTCGTGAAC TTGCTCTGCA TAAGCAGATG ATTGCAGTCA CAGAACACTT AATGTCTTTT
GTCGATGACT CATACACCTA CCATGTTGTC TCTAAAGGCT ATGAAAGCTT ATTTAACAAA
TCATCCCGAG AGATTGTCGG CAAGAGCGTC GAACAGGTTC ATGGAAAAGA GGTTTTCAAC
GATGTATTAA AGCCTTTACT AGACCGAACC TTAAAGGGGG AAACCGTACA GACACGAGTT
TGGATCCATC CCCCCCATAC AACACCTCAA TATATGAACA TTCTTCATAA CCCCTACTTC
AATGAGAAGG GAAATATTGT TGGTGTAATT GTCTCTGCTC ACAACATAAC CGATATGCAT
GCAGCAAACG AAAAAATACA GCAATTAGCC AACCATGATC CACTAACAGG AATGTTAAAC
CGAAGGGCAC TGTTTGAAGT GATGGAAGGT AAATTAAGAG AGCAGGAACA AGCAAAATTA
CAGCTCGCCG TACTTTATAT AGATCTTGAT GGTTTTCAGC AGATCAACGA CCGCTATGGT
CACCATCAAG GAGACAAGGT ACTAAGGTAT GTCGCATCAA AGATAAAAGA CACAGCAATT
GATAGTGAGA TAGTCGCACG GATCGGTGGT GACGAGTTTA TTGTGTTGGC AAGTTTCCCC
CATGGGAATA CTTATGAACA TTATCAGCTT AAACTCGAAG ATCTCTGTGA CAGGCTTAAT
AGTCAACTCT TTATCGATAT CGACATCGAA GGGCAAAGTC TGCCGTTATC AGCAAGTATT
GGCCACTGTT TAGTTAATGA CGCAACAATG GAGCTATCGG CCATTATCAG TAAAGCCGAT
AAAGATATGT ACAGAAACAA ACGAAATGAA AGACTAGGGT TAGTCTCAAT GGCAACAGGT
TTTATCAGGC AAACACCTTC ACAATAA
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| Protein sequence | MTDIEEALAL LAAPCTDERF FQRALKALAL VTQCRWAAFG RPSDVAGKAE VVAFCDLKHT
VPGFEFDLEG SPCELIYRQK YPDTHLLFAK DLQTKFPNFQ LIKDLGANSY QAELILDDGG
NPIGHILVMD PLPQTETMKS KEFFRLLAQR IGVEYKRLLI SRELALHKQM IAVTEHLMSF
VDDSYTYHVV SKGYESLFNK SSREIVGKSV EQVHGKEVFN DVLKPLLDRT LKGETVQTRV
WIHPPHTTPQ YMNILHNPYF NEKGNIVGVI VSAHNITDMH AANEKIQQLA NHDPLTGMLN
RRALFEVMEG KLREQEQAKL QLAVLYIDLD GFQQINDRYG HHQGDKVLRY VASKIKDTAI
DSEIVARIGG DEFIVLASFP HGNTYEHYQL KLEDLCDRLN SQLFIDIDIE GQSLPLSASI
GHCLVNDATM ELSAIISKAD KDMYRNKRNE RLGLVSMATG FIRQTPSQ
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