Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2032 |
Symbol | |
ID | 6116295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2497141 |
End bp | 2500569 |
Gene Length | 3429 bp |
Protein Length | 1142 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641633535 |
Product | ribonuclease |
Protein accession | YP_001760411 |
Protein GI | 170726385 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.390229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.144876 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGGA TGTTAATTAA TGCAACTCAA TCTGAAGAGT TGCGCGTTGC CCTTGTTGAT GGGCAACAAC TGTATGATCT AGATATTGAA AGTCCTGGTC ATGAACAGAA AAAAGCGAAT ATTTACAAAG GTAAAATTAC CCGAGTAGAA CCTTCACTTG AAGCCGCGTT TGTCGATTAC GGCGCAGAGC GTCACGGCTT TTTACCCCTA AAAGAGATCG CAAGAGAGTA CTTCCCTAAA GGTTATTCTT TCCAAGGCCG CCCCAATATT AAAGAGGTGG TAAAAGAGGG CCAAGAGGTT GTTATTCAAA TTGATAAGGA AGAGCGTGGT AATAAAGGTG CTGCACTGAC AACCTTTATC AGTCTTGCTG GTTCTTATCT CGTTCTTATG CCTAATAACC CTCGTGCAGG CGGGATCTCT CGTCGTATTG AAGGTGATGA GCGTACAGAG CTAAAAGCAG CACTGTCTGA ACTAGAAGTA CCTCAAGGTA TGGGCTTAAT TGTTCGTACT GCTGGTGTAG GCAAAGATTC TGCTGAGCTT AAATGGGATC TTAAGGTGCT AGTCCACCAC TGGGCTGCAA TTAAAGAAGC TGCTGATAGT CGTCCAGCCC CCTTCTTAAT TCACCAAGAG AGCAATGTTA TTGTTCGTGC TATTCGTGAC TATTTACGTC GTGATGTCGG TGAAGTTCTA ATCGATCATC CACGTATTTT TGAAGATGCT AAGCAGCACG TATCACTTGT ACGCCCTGAT TTTGTTGATC GTATCAAGCA GTATGAAGCA GAAGTTCCTC TGTTCACTCA TTACCAGATT GAGACTCAAA TTGAATCGGC TTTCCAACGT GAAGTTCGTC TTCCATCTGG CGGTTCAATT GTTATCGATC CAACTGAAGC ACTCACCTCA ATCGATATCA ACTCTGCCCG TGCAACTAAA GGCGGTGATA TTGAAGAGAC AGCTCTCAAT ACTAACCTTG AAGCCGCTGA TGAGATAGCC CGTCAACTTC GTCTTCGTGA TTTAGGTGGC TTGGTGGTTA TCGACTTCAT CGATATGACC CCTGTACGTC ATCAACGTGA AGTCGAAAAC AGAATGCGTG ACGCCGTTCA CCACGACAGA GCTCGCGTTC AATTAGGCCG TATCTCACGC TTTGGCTTAA TGGAGATGTC ACGTCAACGT CTACGCCCTT CCCTTGAAGA GTCTGCTGCG CACCTATGTC CACGCTGTCA TGGCCAAGGC ACTATTCGTG GCACTGAATC TTTAGCACTT TCAATTCTGC GTCTTATGGA AGAGGAAGCG ATTAAGGAAA ACACATCACA AATTGAAGCA GTTGTACCTG TTGATGTTGC CGCCTTCCTG CTAAACGAAA AGCGTAAAGC GATCCGCATA ACTGAGCAGC GCCACGATGT CGAAGTGTAT GTGATCCCAG ATCCAAACAT GACTACGCCA GATTACCGCG TATCACGTCA TCGTAAAGAT GATCAGATCA GTGAATCTAG CTATAAGTTA TTAGATAAGC CTGAAGCTAA GCTTTATGAG CCACGTAAAC TTGAACGTGC AGCGCCACCT CAGCCTGCAT TAAAAGGTTT CTCTGCGCCT AAGAAGTCAA TTGAAGCAAC ACCAAGTGTT GCAGCTAAGC CAGCTGTTAA GGATAGCAAC GAGCCTGGAC TTATCTCCAA ATTCCTCTCT GCTATTGGTG CTCTTTTCAA ATCTGAAGAG AAGAAAGAGG AGCCTAAAAA GCCACAGCAG TCTGGACGCA ACAATCAAAA TAAGAATGCA CGACGCAATA CTCGTCGCAA TGACCGCCGT CCACGTGATG ATAAAGAGCA GTCAGGCGAA AAGAGAGAGC GTAACCCTCG TAACAGCCGT AATAAGAATG CTGATTCGAA TAAAGAGAAT CGTGCAAGCA AAGACAGAGA CGAGCAAGCT AAACGTCAAC CTCGCAATAG CAAGTCTAAT CGTAATCAAA ACAGCGAAAA CGACACGACT GCAGAACAAC CTAAGCAAGA GGTGGCTAGA GAGCGTCGTC AACGTCGTAA TATGCGCCGT AAAGTACGCG TTGAAAACGA GCAAACGGAA ACAGTTGTTG ATTCTGTGAC AGCCCCACAA GAGCAGGCAC AGCCTAAAGC CAATGAGGAG AAGCAGAGCC GTCCAAAGCG TCAGCCTAGA AAAGCTAAGC CTAAACCTCA AGCGGATGAT TCTGTTGCTT CACAAACAGC AGAGCAGGTA GAAGCATCTG ATGCAGTTAA ATCAGATACT GTTCAAGCTG AAGTCCAAGT TGTAACTGAT GCTAAAGCGG TCGAAAGCAA GCCTGTTGAA ACCAGTGTTG AATCAAAACA AGCAGTTGAG CCAAGTACAG CAAAGAGTGA TGACTCAAGC GATACAGCCA ACTCAACTGA AAACTCTGCA CCTCAGTCAG CTGAGAATGT AGAGGCTACA GAGGGCAAAG AAGCGTCTGA TTCTCGTGAT GGTCAACGTC GTAGCCGTCG TAGCCCACGT CATCTTAGAG CCGCTGGTCA ACGCCGCCGC AGAGATGAAG AGACAACAGA AACTTCATCT GGTGCAGCTC CTGCTTTCAT TCCAAATGAA ATTGAAGTTG AAAACCAAGC CAATGAGTCT AAAGCTACTG AAGCGGCTAA CGCTGAAGTA TCTGAGCCAG CTGTCCAAGC TGACACTCAG GTAGTTGCAG AAACTCTTGA TACGGCTAAA CCTGAAGTGT CAGTGAAAAC TGAAGCCACC GCTGCGCCAG CTAAGTCTGA AGCGCCAGTG AAAGCTGAAG CCACATCTGC GCCGACTAAG CCTGAAACGC CAGTGAAAGC TGAAGCCACA TCTGCGCCGA CTAAGCCTGA AACGCCAGTG AAAGCTGCAG CCACATCTGC GCCGACTAAG CCTGAAGCGC CTGTGAAAGC TGAAGCCACA TCTGCGCCGA CTAAGTCTGA AGCGCCAGTA AAAGCTGCAG CCACATCTGC GCCGACTAAG CCTGAAGCGC CAGTGAAAGC TGCAGCCACA TCTGCGCCGA CTAAGCCTGA AGCGCCAGTG AAAGCTGCAG CCACATCTGC GCCGACTAAG CCTGAAGCGC CAGTGAAAGC TGCAGCCACA TCTGCGCCGA CTAAGCCTGA AGCACCGGTG AAAGCTGAAG CCTCGACAGC ATCAGCAACG CCAGCTAGAC CTGAGACGCC AGTTAAGGTT GAAGTTGCAA CAACTGTTGA GACTGTTGCA AGTGTTGAGC CTGTAACCCT AGATACAGCT AAGGTTAAAC CTACTTCAAG TAGCCGTTTT GGTACTATGG TGACGTCTGA TATGACTAAG CCTGTAGTTG AAGTGAGAGA AAATATTGCG ACGCCAATGG GTCGTCAATA TGACTCAAAC GATAACTCGC AGCCAGTCAG GGCAGCAAGA ACTGCAAATA CAGCAAACTC GGAAATGGTA AAACCATAA
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Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKAN IYKGKITRVE PSLEAAFVDY GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVKEGQEV VIQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKAALSELEV PQGMGLIVRT AGVGKDSAEL KWDLKVLVHH WAAIKEAADS RPAPFLIHQE SNVIVRAIRD YLRRDVGEVL IDHPRIFEDA KQHVSLVRPD FVDRIKQYEA EVPLFTHYQI ETQIESAFQR EVRLPSGGSI VIDPTEALTS IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN RMRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HLCPRCHGQG TIRGTESLAL SILRLMEEEA IKENTSQIEA VVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPNMTTP DYRVSRHRKD DQISESSYKL LDKPEAKLYE PRKLERAAPP QPALKGFSAP KKSIEATPSV AAKPAVKDSN EPGLISKFLS AIGALFKSEE KKEEPKKPQQ SGRNNQNKNA RRNTRRNDRR PRDDKEQSGE KRERNPRNSR NKNADSNKEN RASKDRDEQA KRQPRNSKSN RNQNSENDTT AEQPKQEVAR ERRQRRNMRR KVRVENEQTE TVVDSVTAPQ EQAQPKANEE KQSRPKRQPR KAKPKPQADD SVASQTAEQV EASDAVKSDT VQAEVQVVTD AKAVESKPVE TSVESKQAVE PSTAKSDDSS DTANSTENSA PQSAENVEAT EGKEASDSRD GQRRSRRSPR HLRAAGQRRR RDEETTETSS GAAPAFIPNE IEVENQANES KATEAANAEV SEPAVQADTQ VVAETLDTAK PEVSVKTEAT AAPAKSEAPV KAEATSAPTK PETPVKAEAT SAPTKPETPV KAAATSAPTK PEAPVKAEAT SAPTKSEAPV KAAATSAPTK PEAPVKAAAT SAPTKPEAPV KAAATSAPTK PEAPVKAAAT SAPTKPEAPV KAEASTASAT PARPETPVKV EVATTVETVA SVEPVTLDTA KVKPTSSSRF GTMVTSDMTK PVVEVRENIA TPMGRQYDSN DNSQPVRAAR TANTANSEMV KP
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