| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2020 |
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| Symbol | |
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| ID | 6116283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2482529 |
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| End bp | 2483602 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633523 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001760399 |
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| Protein GI | 170726373 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.519564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGTA GAGAAGACTT GATTAAACAA CTTGATGCAA GTGATGACGT TGATACTACA
TCAAATAAGT TTATCACATT AAAGTCGTTA TCTATTACTG CCTTAATCGT TGTAAGTATT
ATCTTTTCGA TAAGTAAGCT GGCTGTCGAG GGGGATAAAA GTGAAGAGTA TCCCATTACG
CCTCAGGGAG CTGTTGAGGG GGAGAGTATC ATTGATGCTC AGGTTTCATC ACCAGTTACA
GAGACCGTTG TGCTGCAGGC TTCCGGCTAT ATTATGGCCA AAAAAATGAT GACGGTCTCT
TCAAATGTAT CAGGACGATT AAATAGCATC ATGATTGAGG AGGGGATGCG AGTTAAACAG
GGAGAACTAT TGGCCACCTT TGATGATTCT ATCCCTCAGA CAGAGCTTAA AATGCTTGAA
TCTCAATACA GTTATGGGCT TGCTAGATTG AAAGAGAGTG AAGCTGAATA TACGGGACAT
CAAGTCAGCT TACGCAGAAT ACAGCGTCTA TTTGATAGCG GTAATGGCAG TGTTGCTGAG
CTTGATGAGA TGAAGACCAA AGCAAACATA TTAGAAGCCA GAGTTGCTGT TGCAAGTCGT
GAGTTGGAAA TTGCTAAAGA AAACATTAAC ACCCAGTTGA GAAGGCTTTT GGAATATAAG
GTGTATTCAC CAATGCAGGG CGTTGTTGTG GATGTGATGG CTCAAGCTGG TGAAGTTATT
TCATCATTAA CAACGTTTGG CACCGATGAG CAATCAGGAA TTTGTACCAT TGTTGACATG
AACTCCTTGC ATGTAGAAGT CGAAGTGAGT GAGCAATATA TCAGCCGCGT AGCAGTGGGG
CAGAGAGCGT TGGCGAAATT AAATGCTTAT CCAGATTTGC CTGTAGATAT AGAGGTAGCG
TTAATCGTTC CAACTGCGAA TAAAGATAAA TCCACGGTAA AGGTTTGGTT AAATATCATT
AAAAATGACC CTCGAATATT GCCTGAGATG GGGGTGGAAG TCTCTTTTTT CCCTCCGGAT
GAAGAGGAAG AACAAGGTCA CCTTACCAGT AAGTTGAGTG ATGTTGCGGC ATAA
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| Protein sequence | MASREDLIKQ LDASDDVDTT SNKFITLKSL SITALIVVSI IFSISKLAVE GDKSEEYPIT
PQGAVEGESI IDAQVSSPVT ETVVLQASGY IMAKKMMTVS SNVSGRLNSI MIEEGMRVKQ
GELLATFDDS IPQTELKMLE SQYSYGLARL KESEAEYTGH QVSLRRIQRL FDSGNGSVAE
LDEMKTKANI LEARVAVASR ELEIAKENIN TQLRRLLEYK VYSPMQGVVV DVMAQAGEVI
SSLTTFGTDE QSGICTIVDM NSLHVEVEVS EQYISRVAVG QRALAKLNAY PDLPVDIEVA
LIVPTANKDK STVKVWLNII KNDPRILPEM GVEVSFFPPD EEEEQGHLTS KLSDVAA
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